Oncorhynchus mykiss (rainbow trout): 118938226
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Entry
118938226 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DDX39A-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118938226
09122 Translation
03013 Nucleocytoplasmic transport
118938226
03015 mRNA surveillance pathway
118938226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
118938226
03041 Spliceosome [BR:
omy03041
]
118938226
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118938226
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118938226
Spliceosome [BR:
omy03041
]
Complex C
Other components
EJC/TREX
118938226
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118938226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
DUF6866_N
Motif
Other DBs
NCBI-GeneID:
118938226
NCBI-ProteinID:
XP_036796409
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All DBs
Position
13:complement(19677056..19680247)
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AA seq
207 aa
AA seq
DB search
MAENDVDNELLDYEEPQVAPETATPAGKKEEKGSYVSIHSSAFRDFLLKPELLRAIVDCG
FEHPSEVQHECIPQAILGMDILYQAKSGMGKTAVFVLATLQQIEPVYGQVSVLVMCHTRE
LAFQISKEYECFSKCRPTVKAAVFFGGLSIKKDEDALTKNSPHFVLVTPGRILALIRNKT
LNLKNVKHFVLDECDKMQIQTTVGRGG
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgacgttgacaacgagctgttggactatgaggagcctcaggttgccccg
gagaccgccacacctgctggcaagaaggaggaaaagggctcttacgtctccatccacagc
tccgcattccgagacttcctgctcaaaccagagctgctccgcgccattgtcgactgtggc
tttgaacatccctctgaagtccaacatgagtgcatcccacaggccatcctcggcatggac
atcctgtaccaggccaagtctggtatgggcaagacggctgtgtttgtactggccaccctg
cagcagattgagcctgtgtacgggcaggtgtctgtgctggtgatgtgccacacacgagag
ctggccttccagatcagcaaagagtatgagtgcttctccaagtgcaggcctaccgtcaag
gcagccgtgttcttcgggggcctgtccatcaagaaggacgaggacgcgctgacgaagaac
agcccccactttgtattggtaacgcccggccgcatcctggccctcatccgcaacaagacc
ctcaacctgaagaacgtgaagcactttgtcctggacgagtgtgacaagatgcaaattcag
accacagtaggacgggggggctga
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integrated database retrieval system
