Oncorhynchus mykiss (rainbow trout): 118941185
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Entry
118941185 CDS
T07259
Name
(RefSeq) syndecan-3-like
KO
K16337
syndecan 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04514
Cell adhesion molecules
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118941185
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118941185
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
118941185
Proteoglycans [BR:
omy00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
118941185
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
118941185
NCBI-ProteinID:
XP_036809034
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Position
18:complement(52473210..52511642)
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AA seq
434 aa
AA seq
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MKLPPCLMTILAALLAHSALGQTWVPSIDLEDSSGDEFYDDEDLFSGSGSGFPEMKVNPT
AVGVSFSTEEPLPLSTTQATGPAPSAPPAAEPNPNPDALPTPLPTEGEGESGIEWERGRE
RERERERERVREMERERERERERDREREREKERERERERERQREIERERERERERARAAQ
TTISPRGPAAVPMATTSTATPLAESVAPSSGVQDLVTTEEEDEDVYLSPDPTTSMPMETT
TEEEEEEEEVTTTDTETTPLPKTTAPPTTIGPALTERSSSAPFRPSVLVTTPIKAAPTER
STRPQQPSTTMNNELGVNGPSGDFEIREEDRRQGNEVVGRGLGMETGAEPDLIGNTINTG
SSAAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQAT
VTYQKADKQEEFYA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccgtgtctgatgacgatcctcgcggcgctgctcgctcactccgcgctg
ggtcagacctgggttccgtctatagatctagaagattcttctggagatgagttctatgat
gatgaagacctcttctcaggctctggatctggctttccagagatgaaggtcaaccctaca
gcggtgggtgtgtctttcagcactgaggagccccttcccctttccaccacccaggctact
ggccccgccccctcagccccacctgcagccgagcccaatcccaaccccgacgctctcccc
accccactacccactgagggagagggggagagtgggatagagtgggagagagggagggag
agagagagggagagggaaagagagagagtaagggagatggagcgggagagagaacgagag
cgggagagggatagagagagggagagagaaaaggagagggagagagaaagagagagagag
aggcaacgggaaatagagagggaacgagaaagagaacgtgaaagagcgagagccgcccag
accaccatctcaccccgtggcccggcggctgttcccatggcgaccaccagcacagcgacg
cctctggcggagagtgtagcaccctctagtggcgtgcaggacctggtcaccacagaagaa
gaggacgaggatgtctacctgtccccagaccccaccaccagtatgcctatggagaccacc
acggaagaagaagaagaagaggaagaagtgaccactacagatacagagaccacacccctc
ccaaagacaacagctccacccactacgattggcccagccctaactgagaggtctagctcc
gccccctttaggcccagtgttctggtgaccacgcctattaaagccgcacccacagagagg
agcacacgcccacagcagccttctacgacaatgaataatgaattaggcgttaatggaccc
agcggagactttgagattcgggaggaggaccgtcgccagggcaacgaggttgttggtcgt
ggccttggcatggagactggggcagaacctgatctgattggcaacacaattaacacagga
agttctgccgctcaacttcctcagaagaacatcttggagaggaaggaggttctgatagcg
gtgatagtggggggcgtggtgggggccctgtttgcagcgttcctggtcatgctgctggtg
tacaggatgaagaagaaagatgaaggcagctacacactggaggaacccaagcaagccacc
gtcacctaccagaaagctgacaaacaggaggagttctacgcataa
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