KEGG   Oncorhynchus mykiss (rainbow trout): 118943990
Entry
118943990         CDS       T07259                                 
Name
(RefSeq) nectin-1-like isoform X1
  KO
K06081  poliovirus receptor-related protein 1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03266  Virion - Herpesvirus
omy04514  Cell adhesion molecule (CAM) interaction
omy04517  IgSF CAM signaling
omy04520  Adherens junction
omy05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03266 Virion - Herpesvirus
    118943990
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecule (CAM) interaction
    118943990
   04517 IgSF CAM signaling
    118943990
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    118943990
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    118943990
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:omy04515]
    118943990
   04090 CD molecules [BR:omy04090]
    118943990
Cell adhesion molecules [BR:omy04515]
 Immunoglobulin superfamily
  Nectin family
   118943990
CD molecules [BR:omy04090]
 Proteins
  118943990
SSDB
Motif
Pfam: C2-set_2 V-set Ig_3 Ig_2 I-set ig Ig_PVRIG FAM183 Syndecan C2-set_3 Insulin_TMD TM_ErbB1 EACC1 YajC EphA2_TM
Other DBs
NCBI-GeneID: 118943990
NCBI-ProteinID: XP_036816952
LinkDB
Position
24:complement(44326788..44898432)
AA seq 527 aa
MAMLATVWIVLLAVNIQAGDGQSVQMDSIKSGFVGSQVELRCIFVNSNPPVKISQVTWQK
FLNGTKQNVAIANPSLGVSVLPPFKERVTFKQAAVRHRTPSLEDTTIMFSNLRLSDEAAY
ICEYTTFPAGNRENMVNLTVFARPLTRMTLTTPTIVARPQKRKMTVATCLSANGKPQSVI
KWDTRLKGEATFQETQNSNGTVTVRSNYVVVPSRETHKQKLTCIVTYRNERITDSVVLNV
QYEPEVKIEGFDGNWYLNRQDVSLTCNTDANPPVTVYQWKLLNGSLPSTVEIRNNSLIFK
GAVTYELAGTYVCDATNGIGTRTGLVEVNVTEKPMARGPPGGILGVLGGVVAAGLIIAVA
VTVFMVYRRQQKTRTETDNDLTDLPPAHKPAPPPPKKKSSDLKGHLTSDDIQVVHLDKGE
DMQKLPLQPPYYDMAPSESTPFTDKPNCGRHELSNPAEHVSYHRVYNKEHCLESQPTQAY
PPPVTFLPQNPYTHPPSNNPLYPASYPAQGQGQGEAPRPLFPKEQSV
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggcgatgttggcgactgtttggatagtccttctggctgtcaatatacaagctggagat
ggacagagtgtccagatggactccattaagtcaggcttcgtgggctcccaggtggagctg
cggtgtatcttcgttaattccaaccctccagtcaagatctctcaggtgacgtggcagaag
ttcctgaacggcaccaaacagaacgtggccatcgccaacccgtcgctgggggtgtccgtg
ctcccgcccttcaaggagagggtgaccttcaagcaggctgcggtccgccaccgcaccccg
tctctggaggataccaccatcatgttctccaacctgaggctgtctgatgaggccgcatac
atctgcgagtacaccaccttccctgctgggaaccgagagaacatggtcaacctcaccgtg
tttgcgcgacctctgacccgaatgaccttgaccacgcctaccatcgtggcccgcccccag
aagcgtaagatgactgtggcaacatgcctctcggccaatgggaagcctcagagcgtgatc
aagtgggacacgaggctgaagggtgaggccacgttccaggagacgcagaacagcaacggc
acggtgaccgtccgcagtaactatgtggtcgtgccaagcagagagacacacaaacagaaa
ctcacctgcatcgtaacctaccgcaacgagaggattaccgacagtgtcgtgctcaacgtg
cagtatgaaccggaggtgaagatcgagggttttgatggtaactggtacctgaaccgtcag
gacgtcagcctcacctgcaacactgacgctaacccccctgtcaccgtctaccagtggaaa
ctgttgaatggatctcttcccagcaccgtggagattcgtaacaactctctaatcttcaag
ggggcggtgacctacgagctagctggaacatacgtgtgtgatgccaccaatgggatcggg
actcgtacaggtctggtcgaggttaacgtcactgagaagccgatggcccggggtcctcct
ggaggaatattgggggtgttgggaggggtcgtagccgctggtctcatcatcgccgtggct
gtcacagtcttcatggtttaccgccggcagcagaagactcgcaccgagactgacaatgac
ctgaccgacctcccgcccgcccacaagccggcccctcccccgcccaaaaagaagagcagc
gatttgaagggccacttgacatccgatgacatccaggtggttcatctggacaagggcgag
gacatgcagaagcttcctctccagcctccctactacgatatggcgccctccgagtcaacc
cctttcactgacaagccgaactgtgggagacacgaactatcaaacccggctgaacatgtg
agctaccatcgagtctacaacaaggaacactgtctcgagtcacaaccaactcaggcctac
ccccctcccgttaccttcttaccccaaaatccctacacacatcctccgtccaacaacccc
ctgtaccccgccagctaccctgcccaaggccaagggcagggcgaggctccacgacccctc
ttccctaaggagcagtccgtgtga

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