Oncorhynchus nerka (sockeye salmon): 115101190
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Entry
115101190 CDS
T07952
Name
(RefSeq) nuclear pore complex protein Nup214-like isoform X1
KO
K14317
nuclear pore complex protein Nup214
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115101190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115101190
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115101190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_NUP159_NUP214
Nup214_FG
Beta-prop_EML_2
Beta-prop_WDR35_TULP_N
WD40_WDHD1_1st
WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_RIG_2nd
WD40_CDC20-Fz
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
115101190
NCBI-ProteinID:
XP_029476342
LinkDB
All DBs
Position
LG19:20139122..20202246
Genome browser
AA seq
2031 aa
AA seq
DB search
MSDDPDSPPEREMKDFQFRQMKKTRVFDSPDDLPKDRSSLLAISNKFGLTFVGLDKKIKV
YRTRDILAADKVDGNSNEIIEGIAALADVAVELPVHNLGLSSDELTLSVSGMSEESGLSL
DFYDIRTFINKARQQKLPFVTLRPGVCLGIIVQDLKWNPVQASMLATCLSDGSMMVLEVT
DSVTVQAQLPATEGITCVCWSPKGKQVAAGKMNATVSQYTPGLQEKKVIPCPSFYSSDNP
VKVLDVQWLSTFVFAVVYAAADGCPETPPELVVISLPTKTEKREERYLNFNDPVYGTCTE
RQLHYFLSHIEDWDVVLAASAASIEVSVIAKQEDKSNWELWLLEDASRGELPVSQNNDDT
LPLGLAIVYTSQQEIHITDEKTLPPVPTLLLLSTDGVLCPFSLLNLNPGAKQLVAAPTNL
ALDGERLPPAGSAAPPPPYPTPLASTLGSFPPLRPPSSPTQTPPASLFTTTAPAPAPVSS
SGFSFSMPPFSSTAPPALSLGGYTAFSTAPASGTSAGFSFASKPLTDTPAAASSFSFSAP
KLPVVEFTPEPSPTPTPTPQRLATASPITVFRGIPEPATPAVKMNLSDRFLAVETPAPAA
VTASLPFSFTPKPAFFEPTSQPAPLPIVTRPTAMPVRPVQTSTPPMVTQKPAPATQASAP
TPQAALSVKALERQLQQRKDSDPVMAGILEEIGHFQKELADLKARSHKADFRVGTIEEMK
ELRKESKDLHVFTLEIKETTESLHGDISTLKTTMLEGFAGAEDAKAMSELNRDRGYLQLL
YKKPLDPRSEDQLKEIRRLYQYVKFAVEDVNDVLDLEWEKHLEKKKKKQKHMIVPEREAL
FTALANNLDIINQQKQRLDTLVKDLHALRLYNKTAAWSTPGPTQPAAATPTEQGLDNELE
SLRDALLKASLDTIPKTLKSSAKMSPVKQSQLRNFLSKRQTPPVRSTAPANLFRSAFLSP
NYYEDLDDVSSTSSLSQALDPDYSHCFEEEPEPEPAPLPVLPTSMPRHPTVVRTPSIAPG
FGAIQSTPFSKVHQGLGMGLGLSPILSTVPTNKINMGGADSTALATKTVKHGAPPTEKAT
PVPLPAQQAAAKAAFLRQMANQKTVVSSSLAESTLKTVPQVVNVQELKDKGPPLPVSTVI
NSSVPAPVGQVVQQVLATVANTNQAKRNSTQGILKVSAESIRSASPQGFVFGGPPKPDAL
VSLASSSSAPSLGEQSSKAFSSFTTASAGAFSFSSVSQGAPPVKDASKFFFGSAGATGKM
MFSSSAGEEPFSFIPKSTSPTLGSTSSPPPSMSGEPVRPTPTFRVEPQATKVVGGETLGS
FSGLRVGQGDEEKPSAAAFSFGQPDNGVGLGLGTGTAQFSFGSTLQQGKPAEAAFGEADS
TVTDLSKTAFKPPELAALSITKPAFSTSTATSFSSLLAAPLSSPSPTLEEEPPKAPTPLS
DPTPPPEPVPSQPSPSVSPPVAEPEVTTSPVSSVTPTPTIPEKATTSPASPPSPAPPIAS
TTPVPPASTTPPAQAAPSTTPDPAPEASPPTITPTPEAPPPAYPAPSSDKPGSIFTQPPA
ITTDSTTIAVTSLTTVINTAAPATTTTTPTDSNTAAPATGTVFGQPAPVTAGCFSSTGFG
APPAGAGAGFGKPVFGQTVGGFGEPVPNAAGGFGFGQSAFGASPGFGQPAAATTAAAAST
AASGGGLFGAPSASNASSFSFGSPSASTASSTGTGLFGQPSATPAFGQQSAGFGQGSMFG
SNTTTTSSTGFSFGQPAAFGNSSTTSVFGQQSSTGSVFGQQQPSSGGGLFGSGSVPAAAS
QQAGGGFFSGLGGKPSEDAANKNPFGTAAATGGFGQPNQTGGTTLFGNSGAKTFGFGSPA
STFGGGEQTASGTFSTGGGSVAAQGFGSFSTPTKQTGGFGSAPVFGSPPAFGGSPAFGGS
AAFGSAPSFSSPMGSSASKVFGEGTAAANVGGFGFASTQQSTMSFGALANQSAPSFGNLA
QQQQGSGFGAPQPSGFSGFGQQGGGGFGSAGGFGSNQSSSQTFGAGPGWRS
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgacccggactctcctcccgaaagggaaatgaaggattttcagttccggcaa
atgaagaaaacccgagtatttgattcacctgatgacctgccaaaggatagatcaagtcta
cttgccatctcaaacaaattcggactgacatttgtcggactagacaaaaagatcaaggtg
taccgcacgcgggacatcctagctgcagacaaagttgatgggaactccaatgaaataatt
gaggggatagcagccttggctgatgttgctgtggagttgcctgtgcacaacctgggcctc
agcagtgatgagctcaccctgtcagtcagcggcatgtcagaggagtctggcctgtcattg
gacttctacgacatccgtaccttcatcaacaaggcccgacaacagaagttgccgtttgtg
actctgcgacctggagtctgcctgggcataattgtgcaggacctcaaatggaacccggtg
caggcgtccatgctggctacctgtctgtctgacggcagcatgatggtgcttgaggtcaca
gacagcgtcacagtgcaggcccagctccccgccaccgaaggaatcacctgtgtatgctgg
agtcccaaaggaaagcaagtggcagcaggaaaaatgaatgcgacagtcagtcagtacact
ccagggcttcaggagaagaaagtgatcccttgcccaagcttctacagctccgacaaccct
gtcaaagtacttgatgtgcagtggctgagtacgtttgtgtttgctgtggtgtatgcagca
gccgatggctgtccagaaacaccccctgaactggtggtgatctccctccctacaaagacc
gagaagagggaggagaggtacctgaacttcaacgaccccgtctacggcacctgcacagag
agacaactgcactacttcctcagccacatagaggactgggatgttgttcttgccgcctcg
gcagcctccattgaagtcagtgtcatcgccaagcaagaagataagtccaactgggagctg
tggctgctggaggacgccagtaggggagagctgcccgtttcacagaataacgacgacaca
ctgcctttgggcctggccatcgtctacaccagccagcaggagatccacatcaccgatgag
aagactcttcccccggtgcctactctgctgcttctgtctacagacggagtgttgtgcccc
ttttcactgctcaaccttaaccctggggccaagcagctggtcgctgcccccaccaacctg
gctctggacggagagagactgccccctgcgggttctgcagcccccccgcccccttaccca
acccctctcgcgtcaaccctggggtcgttccctcctctccgccccccctcgtcccccacg
cagactccccctgcctccctgttcaccaccacagcccctgccccagctccagtctcctca
tccggcttctcattctccatgccccctttctcctccactgctcctcccgccttgtccctc
gggggctacacagccttcagcacggccccagcctcgggcacctccgctggcttctccttc
gcctccaagcctctgactgatacccccgccgcagcctcctccttctccttcagtgccccc
aagcttccagtggtggaatttactccagaaccctcccccactccgacgcccaccccccag
cgcctggccaccgcctcccctatcacggttttcagaggtatccccgagccagccactccc
gctgtgaagatgaacctcagtgacaggttcctggcagtggagactcctgctccagctgca
gttacagcctccctacccttctccttcacccccaaacctgcattctttgagcccaccagc
cagcccgccccgctgcccattgtcaccaggcccacagccatgccagttcgcccagtccaa
accagtacaccccccatggttacacaaaaacctgccccagccacccaggcaagtgcaccc
actccacaggcagcactgagtgtgaaggccctggagagacagctgcagcagaggaaggac
tcggacccagtcatggctggaatactggaggagattggccatttccagaaggagctggct
gacctgaaggcgcgcagccacaaggcagactttagagtgggcaccatagaggagatgaag
gagctgaggaaagagtctaaagacctccacgtcttcaccctggagataaaagaaaccact
gagtctctccatggggacatcagcactctgaaaaccaccatgctggagggctttgccggt
gcagaggacgccaaggccatgagtgagctcaacagagacagaggctacctgcagctgctg
tacaagaaaccactggacccacgcagtgaagaccaactcaaggagatccgcaggctgtac
cagtatgtgaagtttgctgtggaggatgtgaacgacgtgttggacctggagtgggagaaa
catctagagaagaagaagaagaaacagaaacacatgattgtcccagaaagggaggctctg
ttcacggccctggccaacaacctggacatcatcaaccagcagaagcagagactggacaca
ctggtcaaagacctccatgccctgcggctctacaacaagactgcagcctggagtactcct
ggccccacccagcccgctgcagccacccccacagaacagggtttggacaacgagctggag
agtttgagagatgcactcctgaaagccagtctagacaccattcctaagaccttaaaatct
tcagccaagatgtctccagtgaagcagtctcaattgcgtaacttcctctccaagaggcag
acaccaccagtccgctccaccgctccagccaacctgttccgctcggccttcctctctccc
aattactacgaggatctggacgatgtgagctccacctcctccctgtctcaggcccttgac
ccagactactcccactgttttgaggaggaaccggagcccgagcctgcccccctccccgtg
ctgcccacctctatgccccgccaccccacggtggtacgcaccccttccatagccccaggg
tttggtgccatccagtccactcctttcagcaaggtgcaccaaggcctgggcatgggcctg
ggactcagccccatcctaagcacagttccaaccaataagatcaacatgggcggtgcggac
agcacggcactagccactaagactgtgaagcacggagcccctcccactgagaaggccaca
cccgtccccctccctgcccaacaggctgctgctaaagctgctttcctcaggcaaatggct
aatcagaaaacagtggtcagttcctctctggcagagtctaccctgaagaccgttccccag
gtggtcaacgtccaggagctcaaggacaaaggaccgccactgcctgtatccactgtgatc
aactcgtcagtcccagccccggttggtcaggttgttcagcaggttttggcgacggtagcc
aacaccaaccaggccaaacgaaattctactcaaggcatactgaaggtgtctgctgagagt
atccgctcagcttccccccagggttttgtgtttggcggaccccctaaacctgacgcccta
gtttccctggcctcctccagctcagccccgtcactaggcgagcagagcagcaaagccttc
tcctcctttaccacagcgtctgccggggccttcagtttctcctctgtgtcccaaggagct
ccaccagtgaaggacgccagtaaattcttctttggcagcgctggcgccaccggcaagatg
atgttcagctcttctgccggagaggaacccttctccttcatcccaaaatcaacttccccc
accctggggagcaccagctcccctcctcccagcatgtcaggggagcctgtgaggcccacc
cccaccttcagagtggagccccaggcaaccaaggtggtaggaggagagaccctggggagt
ttctcgggtctacgcgtgggccagggggacgaagagaagccctcagcggccgcgtttagc
tttggccagccggacaatggagtggggctaggtttaggcacgggcacggctcagtttagc
ttcgggtcgaccctccaacaaggaaagccagctgaggctgcatttggtgaggcggattct
accgtgacagacttatccaagactgcattcaagcctcccgaactggcagccctgtcgatc
accaagcctgcgttctccacttcaacagccacctccttcagcagcctcctagctgcaccc
ctctcctccccttcccccaccttggaggaagagccccccaaagcccccacccccttatca
gaccctactccacccccagagcctgttccctcacagcccagcccctctgtcagcccccct
gttgctgagcctgaagttactacctccccagtgtcctcagtcacccccacccctaccatc
cctgaaaaggccacaacttcccctgcctcacccccctccccagctccccccattgcctcc
accacccctgtcccccctgcctctaccaccccaccagcccaggcagcccccagcactacc
ccagaccctgcccccgaggcatcaccacccactatcacccctaccccggaggccccacca
ccagcctacccggcccccagctctgacaaacctggctccatcttcacccagccacctgcc
atcaccacagatagcaccactatagctgtcaccagcctcacgacggtcataaacactgcg
gcccctgctaccaccaccaccacccctactgactccaacaccgcagccccggccacaggc
acagttttcggacagcctgctccagtgactgccggctgctttagttccactggctttggt
gctccacctgcaggtgcaggggctggctttggaaaacctgtatttgggcagacagttggc
gggttcggcgaacctgttcccaacgcagccggtggcttcggttttggccagtctgcgttc
ggggccagccctggatttgggcagcctgcagcggccaccactgctgcagctgctagtacc
gctgctagtggaggtggtctgtttggagcccccagtgccagcaatgccagcagtttttcc
tttggctcccccagcgccagtacggccagcagtacgggcacgggcctgtttgggcagccg
agcgcaaccccggccttcgggcagcagagtgctgggtttggacaaggctctatgtttgga
agcaacacaaccaccacatcttctactggcttcagctttggacagcctgcagctttcgga
aactcctccactacctcagtgttcggtcaacagtccagtactgggagtgtctttggacag
cagcagccatccagcggtgggggtctgtttggatctggctctgtcccggctgcagcctcc
cagcaggcagggggaggcttcttcagtggcctggggggcaaacccagtgaggacgccgcc
aacaagaaccctttcggcactgccgctgccaccgggggcttcggacagcccaaccagaca
ggaggaactaccctgtttgggaacagcggggccaaaacctttggctttggctccccagcg
tcaacattcggagggggggagcagacggccagtggaaccttcagcacgggaggggggagc
gtggccgctcaggggttcggctccttctccacccccaccaaacaaacaggtggttttggg
agcgcccctgtgttcggtagcccccctgctttcgggggctccccagcgtttggggggtca
gcagcatttggctcggccccgtccttcagcagtcccatgggctcctcagccagcaaggtg
tttggagagggcacggcagccgccaacgtgggaggattcggctttgcttccactcaacaa
agcacaatgtcatttggtgctctggccaaccagagtgccccatcatttggtaacctggcc
cagcagcagcaggggtcagggttcggagctcctcagcccagtggcttctctgggttcgga
cagcagggaggaggaggctttgggtctgctggcggttttggatcaaatcaatcatcttct
caaacgtttggagccggtccgggttggagaagctag
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