Oncorhynchus nerka (sockeye salmon): 115101205
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Entry
115101205 CDS
T07952
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115101205 (ythdc2)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115101205 (ythdc2)
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115101205 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
ATPase
nSTAND3
AAA_22
PhoH
AAA_16
AAA_7
AAA_30
SRP54
Motif
Other DBs
NCBI-GeneID:
115101205
NCBI-ProteinID:
XP_029476368
LinkDB
All DBs
Position
LG19:complement(20524691..20550826)
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AA seq
1460 aa
AA seq
DB search
MSRPSNASPKPAMAKSKHSGGGGPRGKGLKDIRIDEEVKIAVNISLERFQYSEQKEMEFP
SSLSSTERAFIHRFAQSLGYISKSRGKGSSRTLTIRKKDGSETAQSIMTFNLSHNSKHAV
RSLLQRFPITNKERTDLLPRTERGLSVAIEAESSRDKNRTSGRLNNGIPQVPQKRGPSEL
DFFRSSLPVYERQEEIVQVIKDNRVVLVVGETGSGKTTQIPQFLLDDCSRNGIPCRIFCT
QPRRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTT
MSTVTHVIVDEVHERDGLSDFLLTKMRDMLQTMPNLKLILSSAALDVELFLRYFGSCPVI
HIKGRPFEVKQLFLEDILRTTGYSNKDMRKYKKEIQREEKQQMFLTEWCKVREGGSRQEP
QREKTTSASCVLQENDLLDDGGDSVFTQLNEKDVASLDPWLLKEMDACISDIFLNQDADA
FIQLFNLILSENVSVDFMHSETSATPLMVAAGRGFLSQIEQLLSMGASVRIKASNGWTAL
DWAKHFQQAEVVDLLESYLSSLEAGKLDEWSLVQAATTEMSPEDQELLKEYHHSFDDERV
DLDLIMHLLHNICTSSEDGAVLIFLPGYDEIVGLRDRILYDDKRFTDHSQRYQVFTLHSN
MQTSDQKKVLRNTPAGIRKIILSTNIAETSITVNDVVFVIDAGKVKEKSFDALNHVTMLK
MVWISKASSLQRKGRAGRCRPGICFHLFSRLRFNNMLEYQVPQLLRMPLQELCLHTKLLA
PITCSIAEFLSKAPEPPPILIVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAHRDPFVLPSQASQKRASMLCRKRFTAGTFSDHMALLRAF
QAWQKARTDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLN
SENWSVVKAALVAGMYPNLIHVDRESCSLSGAKEKRVRFHPTSILSQPQPHKKIPPANGQ
VAAVQSLPTDWLIYDEMTRAHRIASIRCCSVVSPITIAIFGGCAKLPSTALQEPAVQKDD
VVNESSDSEIEDRSTANLAQMKIDEWLNFKLDKEMVGLVFQLRQKWHGLFLRRIRSPSKP
WSQLDEATIRALVSVLGAEDQTAGLQQPTGIGQRPRPMSSEELPQTSSWRNANSRRTSGP
TASSDIPELPDEPLIPAPSHTATDRSSRLSPASALLHPKAPHGSRDRGSRRPTDDHSSTP
KSPESASLGFPSPCPSPSPTSSGKCSKSPSPRPGVAPVRYFIMKSSNLRNIDISQQKGIW
STTPSNELKLNRAFLESSLVFLVFSVQGSGHFQGYARMTSVIGQERCQDWGSTGLGGVFS
VEWTRKESLPFQCTQQLLNPWNDNKKVQISRDGQELEPQAGGQLLQLWERLSGKTQQPQQ
QHEVQQDPFLSSDNHRLHTT
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtcctagtaatgcctcacccaaacctgccatggccaaatcaaaacactctggt
ggtgggggtcccaggggcaaagggctgaaagacatacgcatcgacgaagaagttaagatt
gctgtgaacatctcccttgagaggtttcagtacagtgagcaaaaagaaatggagtttcct
tcctccctgtctagtactgagagagccttcatccatcgctttgcacagtcccttggatat
atctctaaaagcagaggaaaaggatcaagccggaccctcactatcagaaagaaggatggc
tcggagacggcccagtccatcatgactttcaacctttcccacaattccaagcacgctgtg
cggagcctgctgcagaggttccccatcaccaacaaggagcgcacagacctactgcctcgc
actgagaggggcttgtctgtggccattgaggctgagagcagccgtgacaagaacaggacc
agtgggcggctcaacaacggcattccccaggtgccccagaagaggggcccatctgaactg
gacttcttccgcagctcacttcctgtgtacgagcgccaggaggagatcgtccaggtcatc
aaagacaaccgtgttgtcctagtggtgggggagaccggctcggggaaaactacacagatc
ccacagttcctcctggacgactgcagccgaaatgggatcccctgtcggatcttctgcaca
cagccccggcgtctggcagccatcgctgtggcagagcgggttgctgcggagagaggggag
agcatcggtcagaccattggctaccagatccgcctggagagcagagtttctcctaagacg
ctgctgaccttctgcacaagcggagtcctgctgagaacactgatggccggagacaccaca
atgtccactgttactcacgtcattgtggatgaggttcacgagcgggatggtctgagtgac
ttcctgctgaccaagatgagggacatgctccagacgatgcctaatctgaagctcatcctg
tccagtgctgccctggacgtggagctgttccttcgctactttggctcctgtcctgtcatc
cacatcaaaggaagaccatttgaggtgaagcaacttttcctggaagacatcttgaggaca
acaggctattcaaacaaagacatgaggaaatacaaaaaggagatccagagggaggaaaag
caacagatgtttttgacagagtggtgtaaggtgcgtgagggtggctcccgccaggagccc
cagagggagaagaccacctcggcctcttgtgtccttcaggagaacgacctgctggacgat
ggaggggacagtgttttcacccagttgaatgagaaagatgtggcatcattggacccgtgg
ctgctgaaggagatggatgcctgcatctcagacatcttcctcaaccaggacgctgacgcc
ttcatccagctcttcaatctcatcctgagtgagaacgtcagcgtggacttcatgcacagt
gaaacgagcgccactccactcatggtggcagcaggtcgaggcttcctcagtcagattgag
cagcttttgagtatgggagccagcgtcagaatcaaggcctccaatggctggactgcgctg
gactgggccaagcacttccagcaggcagaagtggtggacctactagaatcctacctctca
tccctggaggcggggaagctggacgagtggtccctggtgcaggctgccaccacagaaatg
agtccggaggaccaggagctgctcaaggaataccaccacagctttgacgatgagagggtg
gacctggacctcatcatgcacctgctacacaacatttgcaccagctcagaagacggtgcc
gttttaatcttcctccccggatacgatgagatagtgggtctgagggaccgtatcctgtac
gacgataaaagattcacagaccactctcaaaggtaccaggtctttacactccactccaac
atgcagacctctgatcagaagaaagtgctgaggaacactccagctggtatccggaaaata
attctctccactaacatcgcagagacgagtatcactgtcaacgatgtcgtatttgtcatt
gacgcaggaaaagtaaaagagaagtcctttgatgccctgaaccatgtgaccatgctgaag
atggtgtggatctccaaggccagctctcttcagaggaagggcagagctggacgttgccga
ccagggatctgcttccacctcttcagtcgtctccgctttaacaacatgctggagtaccag
gtgccccagctactgaggatgcccctgcaggagctctgtctccacaccaagctgttggcc
ccaatcacctgttccatcgctgaattcctgtccaaagcacccgaaccaccccccatcctc
attgtaaaaaacgcggtgcagatgctcaagaccatagacgccatggacccgtgggaggac
ctgacggagctgggctaccacctggctgacctgcctgtggagccccacctgggaaagatg
gtgttatgtgccgtggtgctcaagtgcctagaccccatcttgaccatcgcctgcacgctg
gcccatcgcgacccctttgtgctgccctcccaggcctcccagaagagggcatccatgctg
tgccggaagcgctttactgcagggacattcagcgaccatatggccctgctccgagccttt
caggcttggcagaaggcccgcacagatggctgggaaaggtccttctgtgagaagaacttc
ctgtcccaggctaccatggagatcatcatagggatgaggacccagctgctaggacagctc
cgagccataggctttgtgcgggcacggggcggcggggacatccgtgacgtgaacctgaac
tctgagaactggtcagtggtgaaggcagccctggtggccggaatgtaccccaacctgatc
catgtggaccgtgagagttgttctctgtctggggccaaggagaagagggtccgcttccac
cccacctcaatcctcagccagccacagccccacaagaagatccccccagccaatggtcag
gtggcagccgtccagtccctgcccaccgattggttgatctatgacgagatgacgcgagcc
cataggatagccagcatccgctgctgctcagtggtctcccccataaccatagccatcttc
gggggctgtgccaaactgcccagcacagccctacaagaacctgctgttcagaaagatgat
gtggtgaatgagagcagtgacagtgagattgaggatcgctccacagccaacctggctcag
atgaagatcgatgagtggctcaacttcaaactggacaaagagatggtgggtctggtgttc
cagctgaggcagaagtggcacggtttattcctgaggaggatccgctctccctccaagccc
tggtcccagctggatgaggccaccatacgggccctggtgtcggtgctgggggctgaggat
cagactgcagggctgcagcagcccacagggattggccagaggccccggcccatgtcctct
gaggagctcccccagacctcctcctggaggaacgccaacagcaggagaacctccggcccc
acagccagctctgacatcccggagctccctgacgaacccctcattcccgccccctcacac
acagccacagacaggtcctcaagactctcccctgcctcggccctcctgcaccccaaagcc
ccccatggcagcagggacaggggctccaggcgccccacagacgaccactcctccaccccc
aagtctcctgaatcggcttcactcggcttccccagcccctgtcccagcccctcacccacc
tcatcaggaaagtgctccaagtctccgtccccgaggccaggcgttgcaccggtgcgttac
ttcatcatgaagagcagcaacctgaggaacattgacatctcccagcagaaaggcatctgg
tccaccacgcccagcaacgagctcaaactcaacagagccttcctggagagcagccttgtc
ttcttggtcttctctgtgcagggctccggacacttccagggctatgcacggatgacgtcg
gtcattggacaggagcgctgtcaggactggggctccacagggctggggggggtcttcagt
gtggagtggaccaggaaggagagcctgcccttccagtgtacccaacagctgctcaacccc
tggaacgacaacaagaaggtgcagatcagcagagacggacaggagttggagccccaggct
ggaggccagctgctgcagctatgggagagactctcagggaaaacacagcaaccacaacag
caacatgaggtacaacaggacccatttttatcatcagataaccacaggttacacacaacg
tga
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integrated database retrieval system
