Oncorhynchus nerka (sockeye salmon): 115101302
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Entry
115101302 CDS
T07952
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03440
Homologous recombination
one04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115101302
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115101302
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115101302
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115101302
03036 Chromosome and associated proteins [BR:
one03036
]
115101302
03400 DNA repair and recombination proteins [BR:
one03400
]
115101302
Peptidases and inhibitors [BR:
one01002
]
Metallo peptidases
Family M67
115101302
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115101302
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
115101302
BRISC complex
115101302
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
115101302
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
115101302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
REP_ORF2-G2P
Motif
Other DBs
NCBI-GeneID:
115101302
NCBI-ProteinID:
XP_029476537
LinkDB
All DBs
Position
LG19:complement(25247674..25290722)
Genome browser
AA seq
296 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRV
EISPEQLSSAATEAERLADMTGRPMRVVGWYHSHPHITVWPSHVGKNQSTPLPHQFHNFS
FHCHGKLFQLVCLRHSFSTTDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQ
SVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAVELPRILCQEEQDTYRKIHSLTHLDPI
TKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNRQSVIELQLEKERLTQELATM
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgagcgcagttcacctcgaatcagatgcctttttggtttgcatgaatcatgca
ttaagtaccgagaaggaggaagtaatgggactctgcatcggagaggtggacaccaaccgc
atcgtccacattcactctgttattattctgcgacgctcagacaagaggaaggatcgcgtg
gaaatctcgcctgagcagctatcttcagctgctaccgaagctgagaggttggctgatatg
actggacggccgatgcgtgtagttggttggtaccactctcacccccacatcactgtgtgg
ccatcacatgtgggtaagaaccagagcacccctctaccacatcagttccacaactttagt
tttcactgtcatggcaaactgtttcagttggtgtgtctgcgtcattcattttctacaaca
gatgtaaggacacaggccatgtaccaaatgatggaccagggctttgttgggctgatattc
tcctgtttcattgaggataagaacacaaaaactggtcgagttctctacacctgcttccag
tctgtacaagcccagaaaggctctgagtacgagagaatcgagatcccaattcatgtggtc
ccgcatgaggccattgggaaagtgtgccttgaatcagcagtggagctcccaagaatcctc
tgccaggaagagcaggatacctacagaaagattcacagcttaactcacctggatccgatc
acgaagatacacaatggctcagtgttcactaagaacctgtgcagtcagatgtctgctgtg
agtggtcccctgctgcagtggctggaggaccgtttggagcagaacagacagagcgtcatt
gagctgcagctggagaaggagagactaactcaggagctggcaaccatgtga
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