Oncorhynchus nerka (sockeye salmon): 115101383
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Entry
115101383 CDS
T07952
Name
(RefSeq) zinc finger BED domain-containing protein 1-like isoform X1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115101383
04121 Ubiquitin system [BR:
one04121
]
115101383
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
115101383
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
115101383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-BED
Dimer_Tnp_hAT
Sgf11
Motif
Other DBs
NCBI-GeneID:
115101383
NCBI-ProteinID:
XP_029476696
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Position
LG19:complement(27591543..27595805)
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AA seq
909 aa
AA seq
DB search
MEGYKPLKGSLYGSFGFKLDAKGILTDKSIVYCFHCEQSFSYHRSKTSLQYHLRKKHPLV
TKATPSEDVESDSEITVISDNSNMDFRGYPLSSSLGPNLRRRGDRGPPGLVLDRRKSTVW
NYYIQLNEMYVECNICKRQLSFHNSTTTMREHLVRKHNIRDNGPPVFHNTVVALAPIPAT
SLQPMAQPRFPCNISTTSTTANTFMFQPDLHVVVKEEQQDADLSPEKGTAKRSRITCAPP
DVGGGANASPVCSRDLEPSNSNTGLLYSENNHFGDSSRSGTCIKESNDKRTGFLTDLILE
VVYRDLQPLSVVEERGFRLLLSCLEPQYPVPSPSQLGSLIWHRYDVLKLQLQQCLQSGLA
PRGITLCTEYWRSVAGCEVGASGRVFLTVSAHFIDKDWHLARCVLQTRPMTAIRERACGS
GLPQFGDTLKAVLSDFHLPQSSVFCVVHDTPKTSEARGTANMGFQKENQIAGPGQSPQDL
PESWVALHCAGEALKLCIQEGLWMEPVRQALSEARRIISHFQHDTPAAAALIHKAEAANK
AGACLALDDPGHWATTIDMCESLLGLKWVVSSVLEEQKAAPNLVDHQWRLLQELVPVLKT
MRIAASFLSEDINVSISALMPCLHGIFRVLRQHIAESSCPVARGVMETVQSGMERQWRLG
EEEALLDSPAVLSSFLDPRFKELRFLSPHARSKLHDKVKELLSAQAQMEAEEMSREHDKG
GDKGEEGRERGVTKMRLMNSQSTIVHLQPPSYNQVSPVAKTMYDILLGEDPTERMPEIHQ
QLENYIAEPLCKRSLSPLHWWHSKEHRFPAVARLARTFLAIPTTAVAADRAFAPRETTVA
QRRAILGSQHLDHILFLHQNSDYVGKLMGGSTVHGERGSDKNGAKKTRETLYQSLVSYER
KPWVGGEEL
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctataaaccactcaaaggaagtttatatggaagttttggctttaaattggat
gcgaaaggaatcttaacagacaaaagcatagtttactgtttccattgcgaacagagcttt
tcctaccaccgcagcaaaacaagcttgcaataccatttgcgaaaaaaacatcctcttgtc
actaaagctacacctagtgaagatgtagagtccgactcggaaatcacagtgatctctgac
aactctaacatggatttccgagggtacccattgtccagcagtctgggaccaaatttgagg
agaaggggggatcggggaccaccaggactggttctggatagacgcaagtctacagtttgg
aattactatatccagcttaatgagatgtatgttgagtgtaatatatgcaagagacagttg
tcttttcacaacagcactacgactatgagggagcaccttgtccgcaaacataatatacgt
gacaatggtccacctgtattccataacacagtggtggccttggccccgattccagctaca
tcacttcagccaatggcccagcccagattcccctgcaacatctccactacatctactact
gccaacacattcatgttccagccagatttgcacgtagttgtaaaagaggagcagcaggat
gctgacttatctcctgaaaaagggacggccaaacgttcacgaatcacatgtgctccccca
gatgtaggaggcggtgccaatgccagccctgtctgcagccgagatttggaaccgtcaaat
tcaaatactggattactatacagtgagaacaaccactttggtgatagcagtcgcagtggc
acttgtatcaaggaatccaatgataagcgaactggcttcctgactgacctaatattagaa
gtggtgtacagggacttgcagccactgtctgtggtggaggagaggggatttcgtcttcta
ttgagctgcttagaaccacagtacccagtgccatctccctctcagctcggcagccttatt
tggcatcgctatgatgttcttaaactgcaactgcagcagtgtcttcagtctggcctggca
ccacgtggcataacactttgcactgaatactggaggtcagtagcaggttgtgaggtggga
gcaagcggccgggtgttcttaactgtaagtgcacattttattgacaaagactggcacttg
gcccgttgtgtgctgcagacccgtcccatgaccgctatcagagagagggcttgtggaagt
gggttacctcaatttggtgacaccctaaaggccgttctctctgacttccatctcccccag
agctctgttttctgtgttgtgcacgatactcccaagacctcagaggccagagggactgcg
aatatgggatttcagaaagaaaatcaaattgctggaccaggccaatcgcctcaggatctc
ccagagagctgggtagcattacactgtgcaggggaagccctcaaactctgcatccaggaa
ggactatggatggaacctgtcagacaggctctttctgaggcccgcaggattatttcacat
ttccagcatgacacacctgctgctgccgctctgatccacaaagcagaagctgctaataaa
gccggtgcttgtctggcgctggatgacccagggcactgggcaactactatcgacatgtgt
gaaagtctgctagggctgaaatgggtggtgagctctgttctagaggagcagaaagctgct
ccaaatttagtggaccaccagtggcgtctcctccaggagctggtgccagttcttaagacc
atgcgcatcgctgcctcctttttgagtgaggacataaatgtgtccatctccgcccttatg
ccgtgcctgcatggcatattccgtgtcctaaggcaacacattgcagagagcagctgccct
gtggctcgaggagtcatggagaccgtgcagtcaggaatggagcgacagtggagactgggt
gaagaggaggccttactggacagccctgccgtcctctcctcattcctggacccgaggttt
aaggagctgcgcttcctcagcccacatgcacgtagtaagctgcacgacaaggttaaagaa
ctgttatctgctcaagcgcaaatggaggcagaggaaatgagcagagagcatgataaagga
ggtgataagggtgaagagggaagggaaaggggagtgactaagatgagattgatgaactct
cagtcaacaatcgttcatctgcagcccccttcctataatcaagtgagcccagtggccaaa
accatgtacgacatactgctaggagaggatcccactgagcgaatgcctgagatccaccaa
cagctggagaactacattgcagagcctttgtgcaaacgtagcctgtcacctctccactgg
tggcactctaaggagcatcgcttccctgccgtggccagacttgcccgtacatttctggct
attcctactacggctgtggctgcagacagagcgtttgctcctagagagactactgttgct
caacgcagggccattctggggtcccagcatttggatcatattcttttccttcaccagaac
agtgactatgttgggaaactgatgggagggtctacggtgcatggagaaaggggcagtgac
aagaatggagccaagaagacaagagagactctgtatcagtctttagtgtcctatgagagg
aaaccttgggtgggaggagaggagttgtga
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