KEGG   Oncorhynchus nerka (sockeye salmon): 115101486
Entry
115101486         CDS       T07952                                 
Name
(RefSeq) pre-mRNA-splicing factor RBM22
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115101486
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:one03041]
    115101486
Spliceosome [BR:one03041]
 Complex B
  Other components
   Prp19-related factors
    115101486
 Complex C
    115101486
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 zf_CCCH_4 Torus zf-CCCH_2 RRM_occluded Nup35_RRM_2 zf-CCCH zf-CCCH_4 zf-CCCH_10 RRM_YTH1 RRM_3 zf-CCCH_PARP12 zf-C2H2_16
Other DBs
NCBI-GeneID: 115101486
NCBI-ProteinID: XP_029476862
LinkDB
Position
LG19:30370900..30378074
AA seq 430 aa
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEACQTCSKIKNVCQTCLLDLEYGLPIQVRDTGLSIKDDVPKSDVNKEYYTQN
MEREIGNSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKSITTLYVGGLG
DSITDSELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLNV
KWGRSQGEGGRRDGRGGKDGRGEGLTEMGLKLEPVPGLPGALPPPPVDEDTPTNYFNLGP
NSAPPVMNISLPPPPGVAMPPPPGFGPPMFHSMDPMGMPPPMGMRPPGHVHYPSQDPQRM
GAHASRHGGS
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggcgacgtctttaggagctaacacttacaatagacaaaattgggaagacgcggatttt
cccattctctgccagacatgtcttggagagaatccttatattcgaatgaccaaggaaaag
tatggcaaggagtgcaagatatgtgccagaccattcactgtgttccgatggtgtcctggg
acccgcatgcgcttcaagaagacagaggcgtgccagacgtgcagcaagataaagaatgtc
tgtcagacctgcctgctggatctagagtatggcttgccaatacaggtccgagacactggt
ctgtcaatcaaggacgacgtgccaaaatcagatgtgaacaaggaatactacacacagaac
atggaaagagagatagggaactctgatggtacccggcctgtgggtctcctgggtaaggcc
cccagctctagtgacatgctgctgaagctagcccgcaccacaccttactacaagaggaac
agaccacatatctgctccttctgggtgaagggagagtgtaagagaggagaggagtgtcct
tacaggcatgagaagccaactgatccagacgatcccctggcagaccagaacattaaggac
cgttactatggtatcaacgaccctgtggctgacaagctgctgaagagagcctccaccatg
ccgagactggacactccagaggacaagtccatcactacactgtacgtgggggggctcgga
gactccatcacagactctgaactcaggaaccatttctaccagtttggggagatccgaacc
accaccatcgttcagaggcagcagtgtgccttcatccagtttgccacccgtcaggctgca
gagttagctgctgagaaatccttcaacaagctcattatcaacggtcgcagactcaacgtc
aaatggggcaggtcccagggagaggggggaaggagggacgggagaggggggaaggacgga
aggggagaagggctgactgagatggggctgaagctggagccggtacctggactgcctgga
gcgctacctccaccgcctgtggatgaagacacccctaccaactacttcaacctgggcccc
aactcagctcctcctgtcatgaacatcagtctacccccaccccccggtgtggctatgccc
ccccctccaggctttgggccacccatgttccactccatggaccctatggggatgccccct
cccatgggcatgaggccccctggccatgtccactacccctcccaggatccacagcgcatg
ggtgcacacgccagccgtcacggaggctcctag

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