Oncorhynchus nerka (sockeye salmon): 115101595
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Entry
115101595 CDS
T07952
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115101595
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115101595
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115101595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_C
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
115101595
NCBI-ProteinID:
XP_029476917
LinkDB
All DBs
Position
LG20:complement(64965771..64986830)
Genome browser
AA seq
1524 aa
AA seq
DB search
MLDSEECTLSLDNLFFERPVVHKVFQPLRTSKKRQRIFHHSEDFMNKSQCSTMVSRGRTE
TPQESGHALEQKHFPLDFSQSPPVRRSLFKPLIGQVLNSGADLNTRHSQTRPREQQTFNQ
VSMATEPRLARQSAAGPSPLSGLGPAAARGPPPHTPDKGTKRANVLPMTPQPLQIQAKVL
YTGKNVVACAPTGSGKTVLFELAIIRLLMETTEPWRNVKAVYMAPIKALCSQRFEDWKKK
FEPLGLSCKELTGDTEIDDFFEIQDAHIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEV
HVVKDTTRGATLEVVVSRMKAVHAFRAAENPQEDVSMRFVAVSATIPNIKDIADWLCDTR
GPATCLEMDESHRPVKLRKVVLGFPCSSNQTEFKFDLSLNYKMANIIQTYSDQKPTLVFC
STRKGVQQSAAVLAKDARFIMRIEHKQRLMKYANSLLDSKLRDLVTFGVGFHHAGVDVSD
RKVIEEAFTMGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYIGGACKEYSDADMLQMIGR
AGRPQFDTSATAVIMTKTHTKDKYMQFMNGAEIIESSLHTHLVEHLNAEIVLHTISDVNM
ALDWIRSTFLYIRALKNPKHYGFSTDLDRCGIEAKLQELCLKNLNSLASIGLVSMDEDVN
IKATEAGRLMARFCVAFDTMEQFSKVTGTETLPELIELMAKGREFTDVQLRVNEKRTLNT
LNKDKNRITIRYPMEGKIKNNEMKVNCLIQAQFGSIPIQEFGLTQDTGRIFRNGVRISRC
LAEFLNQRSKTGFSALLNSLILAKCFSAKLWENSPYVSKQLEKIGLTLSAAMVNAGLTTF
SKIEKTNARELELIVNRHPPFGNQIREAIINLPKYEVCLEQLPRYHVATAEIVVTVNVKN
HEQLLSKRTAPDHHYVTMILGDCDNNVVFLQKLTDLMLLKSGSWSKKIEVAKASKGEEIN
VNLVSSEYVGLDIQQKFSPFFSGPKRYGAESLAPEQHNTMQQAQANAQRSQGATQRTQPT
AQQTQKRNSTSTCATEKDSSQSDPGKRQCNHLCKNKDQCGHDCCKNGGPGVLKRQMNQHS
SFTSYLQDLKTRSDTLTETPVKRLKMRMNGGMGAANMQQFSYSPKPILPASSRYEGNQYG
ALARPQSVDSAEDFTTPQEMAYVVTYGHEYNDYLEDISQTTGDLKPPPVQLQTLTESQST
SMWRKPNAYDGRSLSHSTPQSTPQSQTKSYPQSHSTPQSQSRSYPQSHSTPQSQSRGYPQ
SHSTPQSRGYSQSISQSQSRCYPQSHCTPQSRSYPQSHSTPQSQCRSYPLSQSTTQTQSR
GNSTPQNQSRSFSQSSIVDLTDDSGFFSSSITPSVTFDLGDEWDDFDDDNLVHANEKPCT
SVAKTKGVDLDCDRPKGNSTPLPSISLLPKPRCTTSNSPLRSISPVVSQIPVTTLPVRPH
NSQAAASWSHSDNKTTRTFSEPPMKAPPSFPKQTDTSLPPLGQRFDFFSKTTTPNNDTVT
GKRLQGEDYSKEVEAFMGIFDGLF
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagaatgtactttgtccctggataacttgttctttgagaggccagtt
gtccacaaagtattccagccactcaggacatccaaaaagaggcagaggatctttcatcat
tcagaagacttcatgaacaagtctcagtgttccacaatggtcagcagaggtcgaactgaa
accccacaggagtctggtcatgcgctggagcagaaacattttcctctggacttcagccaa
agcccacctgtacggagaagtttgttcaaacctctcattggtcaggtgctgaacagtggt
gcagacttgaacacccgccacagccagacaagacccagagagcagcaaaccttcaaccag
gtttccatggcgacagagcctcgactggcaagacagtcagcagcaggccccagccccctc
agcgggctgggtccggctgcagcccggggacccccaccgcatacaccggacaagggcacc
aagagggctaacgtcctccccatgacaccccagccccttcagatacaagccaaagttctt
tacacaggaaagaatgttgtggcttgtgctcctactggttctggtaagacagtgctcttt
gagttggccatcatccgcctactgatggaaaccacagagccctggagaaacgtcaaagct
gtttatatggcccccatcaaagctctatgcagccagcgctttgaggactggaagaagaaa
ttcgagcctctgggcctgagctgcaaggagctgaccggagacacagagatcgacgacttc
tttgagattcaggacgcccatatcatcatgaccacacctgaaaaatgggacagcatgacc
aggaagtggagggataactgcctgctgcagttggtccggcttttccttattgacgaggtg
cacgtggtgaaagacactacgcgtggagcgacactagaggtggtggtgagcaggatgaag
gcggtccatgccttccgtgcagcagagaacccccaggaggacgtctccatgagatttgtg
gctgtctccgccaccatccccaatatcaaggatatagcagactggctgtgtgacaccaga
ggccctgctacttgtctggagatggatgagagtcacagacctgtgaaactgaggaaggta
gtgctgggtttcccctgcagcagcaaccagactgagttcaagttcgacctgtcactcaac
tacaagatggccaacatcatccagacctactcggaccagaaaccaacccttgttttttgc
tcaacaaggaaaggagtccagcagtcagccgctgttctggccaaggatgccaggttcatc
atgaggattgagcataaacaacggttgatgaagtatgcaaactctctcctggactcaaaa
ctcagagacctggtgacgtttggggttggtttccaccacgccggggtagacgtgtccgac
aggaaggtgattgaagaggccttcaccatgggagacctgcctgtactgtttacaaccagt
actctggcaatgggggtgaacctgccagcccacctggtggtgatcaagtccaccatgcac
tacatcgggggagcctgcaaggagtacagcgacgccgacatgctgcagatgattggccga
gcaggccggccacagtttgatacgtcagcaacagcagtgatcatgaccaagactcacacc
aaagacaagtacatgcagttcatgaatggggcagaaattattgagagcagcctgcacacc
caccttgtggagcacctgaacgctgagatcgtcctccacaccatctcagacgtcaacatg
gccctggactggatccgctccaccttcctctacatcagagcactgaagaaccccaaacac
tacggtttttccaccgacttggaccgatgtgggatcgaagccaaattgcaagagctctgt
ctgaagaacctgaactccctggcctccattggtctggtctccatggatgaggatgtcaac
atcaaagctacagaggcaggcaggttgatggccaggttctgtgtggcatttgacaccatg
gagcagttcagcaaggtgactggcactgagaccttacctgagctgatagaattgatggcg
aagggcagagagttcactgacgtgcagctgagagtgaacgagaagagaaccctgaacacg
ttgaacaaggacaagaacaggatcaccatcaggtatcccatggagggaaagatcaaaaac
aatgagatgaaggtgaactgcttgattcaggcccagtttggctccattccaattcaagag
tttggactcacacaagacaccggtagaatcttccggaatggagtccgaatcagcagatgt
ttggcagagtttctaaaccagcgctccaagacaggcttctctgctctgctcaactccctg
atactggccaagtgcttcagtgccaagctgtgggagaactctccttacgtctcaaagcag
ctggagaaaatagggttgactctttcagctgccatggtgaacgctgggctcaccaccttc
agtaagatagagaagaccaacgccagggaactggagctgatcgtcaacagacatcctcca
ttcggaaaccaaatcagagaggctatcatcaatctacccaagtatgaagtttgtttggag
cagcttccaagataccatgtcgccaccgcagagattgtcgtgactgtgaacgtgaagaac
cacgaacagctgctgtcaaagagaactgctcctgaccaccactatgtcaccatgatcctc
ggggactgtgacaacaacgtggtcttcctgcaaaaactcacagacttgatgctgttgaag
tcgggaagctggtcaaaaaagatcgaagtggcgaaagcctccaaaggagaggagatcaat
gtgaatctggtcagctcagaatacgtggggttggacattcaacagaagtttagtcccttc
ttctctggaccgaagaggtacggagctgaatcactcgcacctgagcaacataacaccatg
cagcaagcacaggctaatgctcagagatcacagggtgcaacacagagaacacagccaaca
gctcagcaaacacagaagagaaactccacatccacatgtgccacagaaaaggattcctca
caatcagatccaggcaaaagacaatgtaaccacttatgcaaaaacaaggatcaatgtggc
cacgactgctgtaaaaatggagggccgggggttctgaaaaggcagatgaatcagcattcg
agtttcacctcctacctccaagacctgaagaccaggagtgacacactgacggagacacca
gtcaaacgcctcaagatgagaatgaatggcgggatgggagctgcgaacatgcaacagttc
tcttattcacctaagccaatcctacctgcttcttctaggtatgaaggtaaccagtatggc
gctttagcaagaccacagagtgtagattcagctgaggactttacaacaccccaagagatg
gcttatgttgtgacctatggccatgagtataatgactacctggaagacatatctcagaca
acgggagatttgaaaccaccacctgttcaacttcagacccttacggagtcacaaagcact
tcaatgtggaggaagcccaatgcctacgatggaagatccctcagccacagcaccccccaa
agcaccccgcaaagccagaccaagagttaccctcagagccacagcaccccccagagccag
agcaggagttaccctcagagccacagcaccccccagagccagagcaggggttaccctcag
agtcacagcacaccccaaagcaggggttactcccaaagtatctctcagagccagagcaga
tgttacccacagagtcactgcaccccccaaagcaggagttaccctcagagccacagcacc
ccccagagccagtgcaggagttaccctctgagtcaaagcaccacccaaacccagagcagg
ggtaacagtaccccccaaaaccagagcaggtctttctctcagagttccattgtagacttg
accgacgacagtggtttcttctcatcgtcaatcacccccagcgtgacctttgacctggga
gacgagtgggacgattttgacgatgacaacttggtgcacgccaacgagaagccatgcacc
tctgttgctaaaactaaaggagtggacctggactgtgataggccaaaaggaaactccaca
ccactaccatccatttccttactgcccaaaccccgctgcactacatccaattccccactc
aggtcgatctccccagttgtttctcagataccagttactactctcccagtcagaccacac
aactcccaggctgctgctagctggagccactctgacaacaagaccacaaggacattcagt
gaaccccccatgaaagcaccaccctccttcccaaaacagactgacactagcttgcccccc
ctgggacaacggtttgatttcttctcaaagacgactaccccaaacaatgacactgtgact
ggcaaaaggctccagggagaggattacagcaaggaagtggaggcattcatggggatattt
gatggactattttag
DBGET
integrated database retrieval system
