Oncorhynchus nerka (sockeye salmon): 115101654
Help
Entry
115101654 CDS
T07952
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115101654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115101654
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115101654
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115101654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-UBR
U-box
Motif
Other DBs
NCBI-GeneID:
115101654
NCBI-ProteinID:
XP_029476975
LinkDB
All DBs
Position
LG20:complement(15815659..15817851)
Genome browser
AA seq
541 aa
AA seq
DB search
MPLSKPEKLLEHELSCPICLQLYTDPVYLPCGHNYCLVCIQKATDVSGGEKSLPQCPECR
EEYGGTETLQRNFKLCGIIEGYRAVAPADHVKREPLKVRCDHCLDLETLAIKTCLKCEVS
LCARHLQHHTERESFRTHDLVEPQTELGQRGCAIHGRLLEYFCASDMTSLCANCFIEGTH
QNHDVLTFEAAEEEMRRALEIQSKAVANRLQLTETLLQRAAEDQGTSEAVGDKLLSKSVD
LMDSMAGLVSRYKDRMSLLLEKERGHQRESWQSGLGLLEEQQQQLIEAHQRTTEALTETE
KCLFINRFLLIEPQLREVVTGTVARVPNKVPLNPKRLQASLRMEDFRAEMARLLQSLHVL
LNPLELTFNLSTAHTSLLLSNDLQTVKYSGTKQAYADNPERFSTAPQVLCSQGFTSGEHI
WVVEVGDQSMWSVGLCYKSMPRRGDHSRLGHNPASWRLQWKNKKLTACHASSNVALAEMA
NQPLRVEVALDYEGGTLIFHSTKDRREHLHTFRAVFREAVYPAFSILSTKEQSWITLQSG
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgtctaaaccagagaagctgttagaacatgagctcagctgccctatctgcctg
cagctctacacggatcctgtgtatctgccctgtggccataactactgcctggtctgcatt
cagaaggctacagatgtcagcggtggagagaagagcctgcctcaatgccccgagtgcaga
gaagagtacggcggtacagagacactgcaaaggaacttcaagctctgcggcatcatagaa
ggctacagggccgttgcgccagcagaccacgtgaagagagagccgctgaaggtgcgctgt
gaccactgcctggacttagagacactggccatcaagacctgcctaaagtgtgaggtgtcc
ctgtgtgccaggcacctgcagcaccacactgagagggagtccttcaggacccatgacttg
gtggagccccagactgagctgggccagagaggttgtgccatccacggacgcctgctggag
tacttctgcgccagcgacatgacctctctctgcgccaactgcttcattgagggcacccac
cagaatcatgatgtcctgacgttcgaggcagccgaggaggaaatgaggcgggccctggag
attcagagcaaggcggtggccaacaggctgcagctgaccgagaccctgctacagagggct
gctgaggaccagggcacatctgaggctgtgggagacaagctgctgtccaagtctgtggat
ttgatggacagcatggccgggctggtgagcaggtacaaggacaggatgagcctgctgctg
gaaaaggagagaggccatcagagggagagctggcagagtggcctggggctcctagaagaa
cagcagcagcagctgattgaggcccaccagcgcaccactgaggccctcacagagacagag
aagtgtctgttcatcaacaggttcctgctaattgagccccagctcagggaggttgtgacg
ggtaccgtggccagagtgcccaacaaggtccctctgaaccccaagcggctccaggccagc
ctgaggatggaggacttcagggcagagatggctcggctcctccagtctctccacgtcctg
ctaaaccctctggagttgacctttaacctcagcacagcccacaccagcctgctgctctcc
aacgacctgcagacagtcaaatacagtggtaccaagcaggcctacgctgataacccagag
aggttcagtaccgcaccccaggtcctgtgctcccagggcttcaccagtggggagcacatc
tgggtggtggaggtgggcgaccagagcatgtggtcagtgggcttgtgctacaagagcatg
cccaggaggggtgaccacagccggctggggcataacccggcctcctggcgtttgcagtgg
aagaacaagaagctgacggcgtgccatgcctcctcaaacgtggcgctggcggagatggcc
aatcagccactgagggtggaggtggctctggactatgaggggggaacactgatcttccac
agcaccaaggaccgtcgggaacatctgcacacgttcagggctgtgttcagagaggcagtg
taccctgcgttcagcatcctctccaccaaagaacagtcctggatcacgctacagagtgga
gtgtaa
DBGET
integrated database retrieval system
