Oncorhynchus nerka (sockeye salmon): 115101782
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Entry
115101782 CDS
T07952
Name
(RefSeq) tiggy-winkle hedgehog protein-like
KO
K11988
sonic hedgehog
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
115101782
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115101782
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115101782
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C46: hedgehog family
115101782
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Morphogens
115101782
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DHQS_2nd
DrmE_C
Intein_splicing
Hom_end_hint
VldE
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
115101782
NCBI-ProteinID:
XP_029477110
LinkDB
All DBs
Position
LG20:53076886..53080250
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AA seq
415 aa
AA seq
DB search
MDMMLMSIRLALVGFICLSLVSAGFACGPGRGYGKRRHPKKLKPLVYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKNKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADKEGHIVSSD
FLMFMDRDPVTSREFYVFETEKPNRKLRLTPAHLVFVTNNVTDGDMTAVFASNVKPGQQV
FVVDEALDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSLTGLVKEREEIPQRDGIDWYSDILYHIGTLLLDRNSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacatgatgctgatgtcgataagacttgcgcttgtgggcttcatctgcctgtcttta
gtatccgctggcttcgcctgtggtccaggtaggggatatggaaaaagaagacatccgaaa
aaactgaagcctttggtttacaagcagttcattcccaacgtggcagagaagacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggctatttcagtcatgaatcagtgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaggaa
tctttacactatgaaggaagggctgtagatatcaccacctctgacagagataaaaacaag
tatggaatgttatccaggctcgcagtagaggcgggtttcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaaatcgggtggc
tgcttcccaggatccgcctcagttcttctcgaggatggtcggagcaagctggtaaaggaa
ctggaggtgggcgacaaagtgttagctgcagataaagaaggacatattgtatctagcgat
ttccttatgttcatggaccgagatccagtaacaagtcgagaattttatgtttttgaaacg
gagaagcccaacagaaagttaagactgacgccggcacaccttgtcttcgtcacaaataac
gttacggatggcgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgtcgtggacgaggcactagaccacctaaaggcagtcaccgtggaaaggatttacgtg
gaagaatacgagggatcttatgcaccagtgacttcacaaggaaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcattgggcctttgca
ccagtccggttgggtcacgcgttgatgtctttgacaggtctagtcaaagagcgcgaggaa
atccctcagagagatggaatagactggtactcagacattctataccacatagggacattg
ctgctggacagaaactcctttcatccccttggaatgtcacaaagttga
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