Oncorhynchus nerka (sockeye salmon): 115102043
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Entry
115102043 CDS
T07952
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115102043
09123 Folding, sorting and degradation
03018 RNA degradation
115102043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115102043
03041 Spliceosome [BR:
one03041
]
115102043
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115102043
mRNA cycle factors
Stress granule specific factors
115102043
Spliceosome [BR:
one03041
]
Complex C
Other components
Complex C specific factors
115102043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
115102043
NCBI-ProteinID:
XP_029477418
LinkDB
All DBs
Position
LG20:5640867..5647285
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AA seq
651 aa
AA seq
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MNSSGQSYPLASLYVGDLHPDVTEAMLYQKFSPAGPITSIRVCRDVITRRSLGYAYINFQ
QPADAECALDTMNYEVLKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVLETGSDSGIADP
KAHFLGGKCQLSTISFVGHFKSHKERQAEFGAKAMKFTNVYIKNFGDDYSDEKLQEVFSA
FGRTLSVRVMMDERGRSRGFGFVNYENHEDAQRAVEEMNGKELVPGRVLYVGRAQKRMER
QGELKRKFELIKQERIHRYQGVNLYVKNLDDGLDDEKLRKEFAPYGTITSAKVMTDGGHS
KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNKYMQRTMPGPVI
DSYQQAGYYMSAVPQPPSRTFYNPNPASTMRTSPRWAAQPPRPQAPYSGQFVRSAVPRRA
STPISTVRQASTQAPRIINYTQRMANIGTQTAGGRAGMSGGMVRGTQYKYSSGVRNLQQV
ITMPAPMAVQQVVTQQIMEPAVHVRGQEPLTASMLAAAPLMEQKQLLGERLYPLIHGFHS
NLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKENSPKK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtcagtcatacccattggcctccctctacgtaggggacctgcatcct
gacgtcacagaggccatgctctaccagaagttctctcctgctgggcccatcacatccatc
cgtgtctgccgtgatgtcatcactcgcaggtccctaggatacgcatacatcaacttccag
caacccgctgatgcggaatgtgctctggatacaatgaactatgaggtcctcaagggtagg
cctatcagaataatgtggtctcagcgcgacccagggctacggaagtcaggagttggaaac
atttttatcaagaacatggacgagtccattgacaacaaggccctgtatgacacattctca
gcctttgggaatattctgtcttgcaaggtagtgtgtgatgagaatggctccaaaggctac
ggctttgttcactttgaaacccaagaggcagccaatcgtgccattgataccatgaatgga
atgctattgaatgaccggaaagtgctagagacaggtagtgactctggcattgcagaccca
aaggcccatttcctgggggggaaatgtcagttgtccacgattagttttgttggccacttt
aagtcccataaggagcgacaggctgagtttggggccaaagccatgaagttcaccaatgtg
tacatcaagaactttggcgacgactatagtgatgagaaactccaggaggtcttctctgca
tttggcaggaccctcagtgtgcgggtgatgatggacgaaaggggccggtctcgtggattt
ggctttgtaaactatgaaaaccatgaggatgcacaaagggcagttgaggagatgaatggg
aaagaacttgttcctggccgagttctgtatgtgggccgtgctcagaagaggatggagcga
cagggggagctgaaacgcaagtttgagctgatcaaacaggaacgtatccaccgctatcag
ggggtcaatttgtacgtcaagaacttggatgatgggttggatgacgagaaactcaggaag
gagtttgccccttatggcaccatcaccagtgccaaggtgatgacggacgggggccacagc
aagggctttggcttcgtctgtttctcgtctcccgaggaggccaccaaagcggtaactgag
atgaacggccgcattgtggccacaaagccgctgtacgtggctctggcccagcgcaaggag
gagcggaaggccatcctcaccaacaaatacatgcagaggaccatgcctggcccagtcatc
gactcctaccagcaggcaggctactacatgtctgctgtgcctcagcccccaagtcgcact
ttctacaaccccaaccctgcgagcaccatgaggacatctcctcgctgggctgcacagcca
cccagaccacaggcaccctactcgggccagtttgtcaggtctgctgttccccgacgcgcc
tccaccccaatcagcaccgtcagacaggcctccacccaggctccacgcatcattaactac
acacagagaatggctaacattggcacacagacagcaggaggtcgggcaggcatgtctggt
ggtatggtccgaggcacccagtataaatactcatcgggggtgaggaacttacagcaggtc
atcactatgcccgcaccaatggcagtgcagcaggttgttacccagcagattatggagcca
gcggtgcatgtcagaggccaggaacccctcactgcctccatgctggctgcagcccctctc
atggagcagaaacagctgcttggtgagcgattgtaccctctgatccatggctttcactcc
aacctggctggtaaaatcactgggatgctgctggagattgacaactctgagctgctgcac
atgctggagtcacccgagtccctgcattctaaggtggatgaggcggtagctgtgctgcaa
gcccaccaggccaaggaaaactctcctaagaagtag
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