Oncorhynchus nerka (sockeye salmon): 115102099
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Entry
115102099 CDS
T07952
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1-like isoform X1
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
115102099
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115102099
Transporters [BR:
one02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
115102099
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
115102099
NCBI-ProteinID:
XP_029477539
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Position
LG20:complement(8045125..8059855)
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AA seq
720 aa
AA seq
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MATNGTKADGQVTELNEVATNDKPKSLDVKGENTKKDLPERETWGGRFDFLLSCVGYAIG
LGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGMPLFLLETALGQYTSIGGLGVWKLAPVFK
GVGLAAAVLAFWLNIYYIVIIAWAIYYLYNSFTTELPWSSCGNPWNTEKCYSNYSIVDNT
NLTSAVMEFWERNMHQMTDGLEKPGQIRAPLAITLAIAWVLVYFCIWKGVSWTGKVVYFS
ATYPYFMLFILFCRGVTLPGAMDGILFYITPNFEKLKESEVWLDAATQIFFSYGLGLGSL
IALGSYNPFNNNVYRDSIIVCCINSFTSMFAGLVIFSIVGFMANVTNRPIQEVAASGPGL
AFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRALRGRRELF
IAAVCLVSYLIGLSNITQGGLYVFKLFDYYSASGMCLLFLVFFECISISWFYGVNKFYDN
IQEMIGYKPCIWWKLCWVCFTPLIVAGVFLFSAVQMVPLTLNNYVFPAWGQGVGWLMALS
SMVLIPGYMVYMYLGLKGTWKERLQIMFQPPAVVRRPQENGPEAVVAETNIASPSNPANP
VSPANPASPGNPASSGNPVSSGNPASPANPTATSPVAAAPASPTPPGIPVTLASPVNPTS
LTVPTVPTVPTVPITPANPTSPTSPPPNPVSATPTEPAIPPLNIASSTNSTNLTNAEANV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaacggcaccaaagcagatggacaagtaacagaacttaacgaagtggcaact
aatgacaaacccaagtcactggacgtgaaaggggaaaataccaaaaaggatcttcccgaa
agagaaacatggggagggcgattcgatttccttctgtcgtgtgtaggttatgcaattgga
ctgggcaacgtatggagatttccatatctctgtggaaaaaacggtggaggagccttcttg
atcccctattttttgacactcatatttgctgggatgcccctgttcctgctggagacggcc
cttggtcaatacacctcaattggtgggcttggagtctggaaactggctcctgtattcaaa
ggtgttggccttgcagcagctgtcctggccttctggcttaacatttattacattgtcatc
attgcctgggccatttactatctctacaactcctttaccactgaacttccatggagctca
tgtggcaatccatggaacacagaaaagtgttactcaaactacagtatagttgataacacc
aatcttaccagcgcggtgatggagttttgggagcgcaacatgcatcaaatgaccgatggc
ttggaaaaaccagggcagatccgagctccactggcaataacactggccatcgcttgggtc
ctagtgtacttctgtatctggaaaggggtgagctggactggcaaggttgtgtacttctcg
gccacgtacccctatttcatgcttttcattctgttctgccgtggagtgactctacctgga
gctatggatggaattctcttctatatcacccctaactttgaaaaactaaaagaatctgag
gtatggctggatgctgccactcagatatttttctcctacggtttgggactgggctcactg
atagctcttggcagctataacccttttaataataatgtttacagagactctatcatagtg
tgctgcatcaactccttcaccagcatgtttgcgggcctggtcatcttctctattgtgggc
ttcatggcgaatgtgactaacagaccaatacaagaagtcgcagcttcaggtccaggcctg
gcttttctggcataccccgaggctgtgacccagctgcctatttctcctctctgggctatc
ctgttcttctccatgctgctgatgctggggattgacagtcagttctgcacagtggagggc
tttataacagctctggtggatgagtttcccagggcactgaggggcaggagggagctcttc
atcgctgctgtctgcctggtctcctacctgatcggcctgtccaacatcacacagggaggc
ctgtacgtgttcaagctcttcgactactactctgccagtgggatgtgcctgctcttcctg
gtcttctttgagtgcatctccatatcctggttctatggtgtgaacaagttctatgacaac
atccaggagatgattggctacaagccctgtatatggtggaagctgtgctgggtctgtttc
actcctctcatcgtggctggggtgttcctgttcagtgcagtccaaatggttcctctcacc
ttgaacaactacgtgttccccgcctggggccagggagtgggctggctcatggctctgtcc
tccatggtcctcattcccggttacatggtctacatgtatctcggactcaagggcacctgg
aaagagcgcctgcagataatgtttcaaccgcctgcagtggttcgacggccacaggagaat
gggcctgaggcagtggttgcggagaccaacatagctagtccttctaacccggccaaccca
gttagccctgccaacccagcaagccctggcaacccagctagttctggcaacccggttagt
tctggcaacccagctagtcctgccaacccaactgctacaagcccggttgctgcagccccg
gccagcccaacacctccaggcattccagttactctggctagccctgtgaacccaaccagt
ctgaccgtcccaaccgtccctaccgtccctaccgtccctatcactccagccaacccaacc
agccctaccagcccaccacccaatccagttagcgcaacaccaactgagccagccatccca
ccactcaatatagcgagctcaaccaactcaaccaacctaaccaacgcagaggccaatgtc
tag
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