Oncorhynchus nerka (sockeye salmon): 115102117
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Entry
115102117 CDS
T07952
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115102117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115102117
03036 Chromosome and associated proteins [BR:
one03036
]
115102117
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115102117
Coactivators
SAGA/TFTC/STAGA complex
115102117
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115102117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
115102117
NCBI-ProteinID:
XP_029477571
LinkDB
All DBs
Position
LG20:8460969..8475972
Genome browser
AA seq
625 aa
AA seq
DB search
MVLVRSESGQLLMIHQQTLAQMQSQSQSAMTPRAATPTSTPPVQITSVQAPGTPMMSRQV
TPTTTITKQGSTAQTTVQATTTLQRPPVLQQNTIMLGGAAATSGQAPVQPCSAAVTHRAG
TPGTPGAPTVVSTMEILENVKKCKNFLSTLIKLASSGKQSSETTANVKELVKSLLESKIE
AEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQMTPDSAAFIQQSQLPHTGAQPAAPSKA
LTAAVLGGTSTAQNSRLNSSSPGAKGTMHQSPVISLAQTPHSKPGLMVPQQQGAMGRPQV
TLAQSPMVTLRGQPHSHIIMGQPQVVRQLQTVPVVKQALAPGAKVTLGPQSMLSVVLKNR
QKEAGGGTFKDDDDINDVASMAGVNLSEESARILATNSELVGMVTRSCKDEAFLYTSSLT
QRVHEIGGRLGVTDLGPEVISYVSHATQHRLQNLLEKLTVVAQQKSITFKEEDKCEQVSD
VRAQLKFFEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELNQI
RQKEANMTALAAIGPRKKRKMNSPVSGTGAEDLCSGPSPSGGYSSGGSRPQRQRITRVNL
RDLLFCLENERETSRSHLLYKGLLK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggtgctggtacgcagtgagagtgggcagcttctgatgatccaccagcagaccctggcc
cagatgcaatcccagtcccagagcgccatgaccccacgggcagccacccccaccagcact
ccccctgtccagatcacttctgtacaggctccagggacgcccatgatgtcccgtcaggtg
acccccaccaccacaatcactaagcagggctccacggcccagaccaccgtccaggccacc
accaccctccagaggcctcctgtactacaacagaacaccattatgctgggtggagcggcc
gccacctcaggtcaggctccagtgcagccttgctcggcagcagtcacccatagagcaggg
acccctgggacaccaggtgcccccacggtcgtttctaccatggagatcctggagaatgtg
aagaagtgtaagaacttcctgtccacgctgatcaaactggcatccagcgggaagcagtcg
tctgagaccacagccaacgtcaaggagttagtcaagagcctgctggagagtaagatcgaa
gcggaggacttcaccagtcggttataccgggagctcaactcctctcctcagccatatctc
gtgcctttcctcaagaggagtcttcctgcactgcgtcaaatgaccccagactcggcagcc
ttcatccagcagagccagctgcctcacactggcgcccagcctgccgccccctccaaggcc
ttgactgctgcggtgctggggggcacgtccacggcacagaactcccgtctcaacagtagt
agccctggggccaagggtaccatgcaccagtctcctgtcatcagcctggcccagacacct
catagcaagcctggcctgatggtgcctcagcagcagggggcaatggggaggcctcaggtg
actctggcccagtcacccatggttacgctccgaggccaaccccacagtcacatcatcatg
gggcagccgcaggtggtcagacagcttcagacagttcctgtagtgaagcaggctctagca
ccaggagccaaggtaacactggggccccagtctatgctctctgtagtactgaagaacagg
cagaaggaggcaggcggaggaaccttcaaggatgatgatgatataaatgacgtggcctct
atggctggagtcaacctatcagaggagagtgcccgcattctggcaaccaactctgagctg
gtcggcatggtgactcgctcttgtaaagatgaggccttcctctacacctcctcactaacc
cagagagtacatgagataggcgggaggttaggggtgactgacctggggccggaggtgatc
agttacgtgtcccatgcaacacagcatcggctgcaaaacctgctggagaaattgacggtg
gtggcgcagcagaaaagcatcaccttcaaggaggaggataagtgtgaacaggtgagtgac
gtgcgagcacagctgaagttctttgagcagctggatcagatggagaaacagaggaaggag
gagcaggagagagagatcctgatgaaggcagctaagtctcgatcacgacaagaggaccca
gagcagcttcggcttaaacagaaggctaaagagatgcagcagcaggaactgaatcagatc
aggcagaaggaggccaacatgacggccctggcagccatcggccccaggaagaaaaggaaa
atgaactcccctgtcagcggaaccggggctgaggacttgtgctctggtccctctccgtca
ggtgggtacagtagcggaggctccaggcctcagcgccagcgcatcacccgggttaacctc
agggacctgctcttctgtctggaaaatgagagggagaccagccgctcacacctgctctat
aaaggcctcctcaaataa
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