Oncorhynchus nerka (sockeye salmon): 115102149 Help Entry 115102149         CDS       T07952                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one04510   Focal adhesion one04512   ECM-receptor interaction one04518   Integrin signaling Brite KEGG Orthology (KO) [BR:one00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     115102149    04518 Integrin signaling     115102149  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     115102149  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:one00536]     115102149 Glycosaminoglycan binding proteins [BR:one00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    115102149 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  115102149 NCBI-ProteinID:  XP_029477627 LinkDB All DBs Position LG20:10193103..10222617 Genome browser AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPAGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGASGPMGPRGLSGERGRPGPSGSAGARGNDGLPGPAGPPGPVGPAGAP GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPHGAPGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPLGARGQPGVMGFP GPKGANGEPGKAGEKGLVGRQGLIGLSGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTP GSDGPKGAIGPSGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEKGDAGGDGLP GPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGAGGDRGPPGPVGPP GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPSRTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSNDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ SLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta ctatccattgtcagatgccaggaagaggatgaccacgtggctattggtgctaagggccag aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggcccctcaggtgagcagggacctcgtggatcagccggagctaagggtgataagggaaat gttggccccagaggcagagatggcgagcctggcaccccagggaaccccggaccccctggc ccacccggacctaacggacctgcaggccttggcgggaactttgctgctcagatggctggt ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccccctggcccttctggagcccctggcccacaaggtttccaaggt aaccctggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct ggagccaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca cgtggtctgtctggcgagagaggccgtcccggaccttctggatctgctggtgcccgaggt aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggcgcttct ggaattgctggtgcacctggtttccccggaccccgtggcccccccggacctcagggagca acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctataggtccccatggcgcccctggccccgct ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgcaggt tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggatggt cgccccggcccacctggtcctctgggagcccgtggccagcctggtgtgatgggattcccc ggaccaaagggagccaatggtgagcctggaaaggcaggagagaagggtcttgtgggtcgt caaggtctgatcggtctgtctggtaaagatggtgagacaggtgctgctggacctcttggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgctactggacctagaggcgagcgtggtttccctggt gagagaggcggtgctggacctcagggtctgcagggacctcgtggacttcctggaactccc ggaagtgatggaccgaagggagccattgggccatctggtggtgctggagctcagggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagatggttctaga ggtttgactggtcccattggtcctcctggcccagctggtcccaatggcataaagggtgag ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtccccccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagacgctggg ctgcgtggagctgctggagcccctggcgagaagggagatgctggaggggatggtctccct ggtcccgatggtccttcaggtccccagggtctggctgggtcacgtggtattgttggtctg cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggatctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct ggactgtctggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggcgcccccggcgctcccggtgcccccggccctgttggccccctgggcaagcag ggagacagaggagagggaggtgctcaaggacctgccggacccgctggaccagctggcgct agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcctggacctcca ggctccgcgggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc gggccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgacgaggcgtcc agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag atcgagaacctgcgcagccctgatggtagccagaagaacccttcccgcacctgcagagac ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaacgtgcctcaaaagaactggtggacgagcaagagcaacgaccgcaaa catgtctggtttggagagaccatgaatggaggattccacttcagctacgctgaggacggt accaacgctgccagtatccagctgaccttcctgaggctgctgtccacggaagcgtctcag agcctcacctaccactgcaagaacagcgtggcctatatggacgcatccacgggcaacctg aagaaggctctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc cgcttcacctacagcgttatggaggatggctgcaagaaacacacaggccagtggggaaag actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc atggacattggaggagcggaccaggagttcggtgtggatgtgggaacagtctgcttcttg taa

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