Oncorhynchus nerka (sockeye salmon): 115102316
Help
Entry
115102316 CDS
T07952
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 2-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04814
Motor proteins
one05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115102316
09142 Cell motility
04814 Motor proteins
115102316
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115102316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115102316
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115102316
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
115102316
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
115102316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
Dynein_IC2
WDR55
Beta-prop_EML
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IP5PC_F
Beta-prop_WDR41
Beta-prop_WDR11_1st
Beta-prop_DCAF4
Rrn6_K-rich
Motif
Other DBs
NCBI-GeneID:
115102316
NCBI-ProteinID:
XP_029478042
LinkDB
All DBs
Position
LG1:14180775..14206378
Genome browser
AA seq
628 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEDERKKKEADLKKDAAPLDDSDLEKKRRETDA
LLQSMGITSADVPVVPPPMSPTSKSVGTPSEAGSQDSGDGAVGSRTLHWDSDPSTLQLHS
DSELGRGPLKLGMAKITHVDFPPKETVSYTKETQTPVTTQQKEEEDEEEEIAPPQPVLEI
QMEKPDQKEEEEAPPQELTEEEKLQILHSSEFITFFDHSTRIVERALSQHVDVFFDYSGR
EMEEKEGEIQAGAKLFLNRQFVDERWSKHRVVTCLDWSPQYPELLVASYNNNEEAPHEPD
GVALVWNMKYKKNTPEYVFHCQSAVMSAAFARFHPNLVVGGTYSGQIVLWDNRSNKRTPV
QRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSQPQDSLELVFKQSK
AVAVTSMSFPLGDVNNFAVGSEDGSVYMACRHGSKAGISEMFEGHHGPITGIDCHTATGP
VDFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHLD
LWNLNNDTEVPTASTTVEGNPALNRVRWAHSGKEIAVGDSDGQILVYDVGEQIAVPRNDE
WTRFVRTLAEINENRDDAEELAAQRLSA
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaaaagcgagctgaaagcggagcttgagcggaagaagcaacgcctggctcag
atcagggaggagaaaaaaaggaaggaagatgagcgcaaaaagaaagaggctgacctgaag
aaagatgccgccccactggatgactcggatttggagaaaaagagacgtgagacagatgcc
cttctgcagagcatgggcatcacatcagctgatgtccctgttgtccctcctcccatgtcg
ccgacctccaaatctgtgggcacaccaagcgaggcagggagccaagactcgggcgacggc
gccgtgggatccaggactctacactgggactctgacccgtctactcttcagcttcactct
gactccgagctggggcgtggacctctgaagctgggcatggccaagatcacccatgttgac
ttccctccaaaagagacggtgtcgtacaccaaggagacccagacgcctgtgacgacccag
cagaaagaagaggaagacgaggaggaggagatcgctccaccacaaccagtgcttgagatc
caaatggagaaaccagaccagaaagaggaggaggaagcacctccacaagagctgactgag
gaggagaagctgcagatcctccactcctcagagttcataaccttctttgaccacagcacc
cgcatcgtggagagggccctgtcccaacacgtggacgtcttcttcgactacagtggccgg
gagatggaggagaaggaaggtgagatccaagctggggccaagctgtttctgaacagacag
tttgtggacgagcgctggtctaagcatcgcgtggtcacctgtctggactggtcccctcag
tatcctgagctgctggttgcctcatacaacaacaacgaggaagccccccacgagccggac
ggggtggccctggtctggaacatgaagtacaagaagaacacgccggaatacgtcttccac
tgccagtctgcagtgatgtcggccgcctttgccaggttccaccctaacctggtggtgggg
ggcacctactcggggcagatcgttctgtgggacaacaggagcaacaagaggacccccgtg
cagaggacccctctgtcagcagcagctcacacgcacccagtgtactgtgtgaacgtggtg
ggcacccagaatgcccacaacctcattagcatctctaccgatggcaagatgtgttcctgg
agcctggacatgctatctcaaccgcaggacagcctggagctggtgttcaagcagtcgaag
gccgtcgctgtcacctccatgtctttccccctcggagatgtcaacaactttgcggtgggg
agcgaggacgggtccgtctacatggcgtgtcgccatggaagtaaagcagggatcagtgag
atgtttgagggccaccacgggcctatcacagggatagactgtcacacagcgaccgggccc
gtcgacttctcccacctgtttgtcacctcctcctttgactggaccgtcaagctgtggagc
accaagaacaacaagccactgtactcgttcgaggacaactctgattacgtctatgacgtc
atgtggtcccccactcacccggctctgtttgcgtgtgtggatggagtgggccatcttgat
ctgtggaacctcaacaacgacacggaggttcctacagccagtaccacagtggaggggaac
ccagccctgaaccgcgtgcgctgggcccactctggcaaagagatagccgtgggagactct
gatggacagatcctagtctatgatgttggagagcaaatcgctgttccacgcaacgacgag
tggacccgttttgtccgaaccctggcggagatcaacgagaaccgggatgacgccgaggag
cttgccgctcagcgcctctctgcttga
DBGET
integrated database retrieval system
