Oncorhynchus nerka (sockeye salmon): 115102464
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Entry
115102464 CDS
T07952
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115102464
03015 mRNA surveillance pathway
115102464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115102464
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115102464
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115102464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115102464
NCBI-ProteinID:
XP_029478299
LinkDB
All DBs
Position
LG20:22197839..22202848
Genome browser
AA seq
493 aa
AA seq
DB search
MATDSWALAVDKQEATTDSFGSLVIRSLPRGGGDAAPNKAKKGTTKQVENDTNVEGEEKE
DKAAQSLLNKMIHTSLVNTTNQVEVLQRDPNSPLYSVKTFEELRLKDKLLKGVYDMGFNR
PSKIQENALPMMLAEPVYYPSGSRPQNLIAQSQSGTGKTAAFVLAMLSHVDPTNKWAQCL
CIAPTYELALQTGKVIEQMGKFYPEVKLAYAIRGNKLDRGAKLQEQIVIGTPGTVLDWCS
KLKIINPKKISVFVLDEADVMIATQGHQDQSIRIQRMLPKECQMLLFSATFEDSVWKFAE
RVVPDPNIIKLKREEETLDTIKQYYVLCSDKEEKFTALCNIYGAITIAQAMIFCHTRRTA
GWLAAELTKEGHVVALLSGEMTVEQRATIIERFREGKEKVLVTTNVCSRGIDVEQVSVVI
NFDLPMDKDGNADNETYLHRIGRTGRFGKRGLAVNMIDSKHSMNILNQIEEHFNKKINKL
DTDDLDEIEKISN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctactgactcttgggcccttgctgtcgataaacaggaagctacgactgactcattc
ggctccttggtgataagatctctacctcgaggtggaggtgatgctgcacctaataaggca
aaaaagggtactacaaagcaagtggagaatgacaccaacgtcgaaggggaggaaaaagag
gacaaagcagcccagtcattgttgaataagatgatccacaccagccttgtgaacactacc
aatcaagtagaggttcttcagagggatcccaactctcctctttactcggtcaagacattt
gaagagctgaggctgaaagataagctgctgaagggagtgtatgacatgggcttcaacaga
ccctctaagatccaggagaatgccctgcccatgatgctggcagagcccgtgtattatccc
tctggttccagacctcagaacctgattgcccaatcacagtccggtacaggtaaaacagct
gccttcgtgctggccatgctcagccatgtcgacccaactaacaaatgggcacagtgtctt
tgcattgccccaacgtacgagctagctttgcagactggtaaagtcattgaacagatgggg
aaattctatcctgaggtcaaattggcatatgccattcgtggcaataaattggaccgaggg
gcgaagcttcaggagcagattgtcatcgggacacctggcacggtcttggactggtgctcc
aaactgaagatcatcaaccccaagaagatcagcgtctttgtcctggacgaggctgatgtc
atgatcgccacacagggtcaccaggaccagagcatccggatccaaagaatgttgccaaag
gaatgtcagatgctgctgttctctgccacctttgaggactctgtgtggaagtttgctgag
agggttgtgccagaccccaacatcatcaagctgaaacgtgaagaggagactctggacacc
atcaagcagtattacgtgctttgcagcgacaaggaggaaaagtttacagcactctgtaat
atctacggcgccatcaccatcgcccaagctatgatcttctgtcacacccgaaggacagct
ggctggctggctgcagagctgaccaaggagggtcatgtggtggcgctgctgagtggggag
atgactgtggaacagagagcgaccatcattgaacgcttcagggagggcaaggagaaggtc
ctggtgaccaccaacgtatgctccagaggcattgatgttgagcaagtttctgtggtgata
aattttgacctgcccatggacaaagacggaaacgctgacaacgagacataccttcaccgg
attggtcgcacaggacgtttcggcaagaggggccttgcagtcaatatgattgacagcaaa
cacagcatgaacattctcaaccaaatcgaggaacatttcaataagaagatcaacaagctt
gacactgatgatctcgatgaaatcgagaaaatcagcaactag
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