Oncorhynchus nerka (sockeye salmon): 115102707
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Entry
115102707 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B-like
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04120
Ubiquitin mediated proteolysis
one04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115102707
04120 Ubiquitin mediated proteolysis
115102707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115102707
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115102707
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
U-box type E3
115102707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Pico_P1A
Motif
Other DBs
NCBI-GeneID:
115102707
NCBI-ProteinID:
XP_029478796
LinkDB
All DBs
Position
LG20:33148951..33242052
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AA seq
1179 aa
AA seq
DB search
MELSANEICRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGATPQPFPPAASHALG
LNVQSVTSLMGASGVAYRSQSSEGVSSLSSSPSNSLETQSLSRSQSMDIDTASCEKSSIS
QVDVDSGIENMEVEDNDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDRDVI
FLPSLAAEFHQSSPKDVYSDFKDLIGQILMEVLMIPSCSQRMSHIHNPFASLTATSQPIA
VAKSPDRHLTLVQPSSQGGSPMATCASSFGISSLSSLGVSAGGIDSQSCSDCFSIEACME
TEMLNYLIERFDSVGMEESKAPKICSHPSVSQLLSNIRSQCISHAALVLQGALTQPRSPL
QQSLLVPYMLCRNLPYGFIQELARMTHQEEVFRQIFVPILQGLGLAVKECSFDSDNFKFP
LMALAELCEIKFGKTHPMCNLMTSLPLWCPKSLGPGMGREVQRLSFLGAFFSLSVFAEDD
TKVGDKYFSGPAITMENTRVGSQTLQHYLESARGDLFKILHNILLNGETREVALNYMAAL
VNRNVKKAQMQTDDKLVSTDGFMITFLSVLQQLSMKIKLEMVDPYYIFHPLCRLQVSREE
TRLKATMEELKPWLAEIHDPSKLYDPKFLTECFFLTLHTHHLSILPGCRRYIRRLRAIRE
LNRTVEELKSSESQWKDSPLASRHREMLKRCKTQLKKLVRSKACTDAGLLDENLLRRCLQ
FYSMVIQLILRMVDPAYPHTTLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYSPQVLYE
PCVQNIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFSEMMENHQLSVKH
LVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNMGHHGTFLEEFNSGKQFVR
CINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQSRQSQLTQDERVSRS
YLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYG
FEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMKKAGIKSTITIEKFK
LLLEKVEEIVARNSQSEMDYSDAPDKFKDPLMDTLMTDPVILPSGNIMDRAIILRHLLNS
PTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagtgccaacgagatctgcaggaggagactggcaagactggcaggaggacaa
acatcccagcccagcactcccctgacgtccccacagagagagaccccccctgggcccctt
cctgggacctcaggggccacaccccagccctttccaccagctgcctcacacgcactggga
ctcaatgtccagagtgtcacctctcttatgggcgcctcaggtgtggcataccgcagtcag
agcagcgagggtgtgagctccctctccagctctccctccaacagcctggagacccagagt
ctgtccagatctcagagcatggacattgacactgcctcctgtgaaaagagcagcatatcc
caagtggatgtggactcagggatagagaacatggaggtggaggacaatgaccgcagggag
aggaggaacctggctgaaaaggaatccgctgaaacctccgatgtctctgaagagcaggct
ctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaggacagagatgtcatc
tttctcccctcgcttgccgcagagttccaccagagcagccccaaagacgtctactctgac
tttaaagacctgattggccagatcttgatggaggttctcatgatcccgtcctgctcccag
cgcatgtcgcacatccacaatcccttcgccagcctgactgccacgtcccagcctattgct
gttgccaaatctcccgaccgccacctgacgctggttcagccctctagccagggcggcagt
cccatggccacctgtgcaagctcatttgggatcagctctctgtccagtttgggtgtgtct
gcagggggaattgactcgcaatcctgcagcgactgcttctccatcgaggcgtgcatggag
actgagatgctcaactacctcatcgagcgcttcgacagtgtcggcatggaggaaagtaag
gcgcccaagatttgcagccaccccagtgtcagtcagctcctcagcaacatacgctcacag
tgcatttcccacgccgctcttgtccttcagggtgccctcacgcagcccaggagccccctg
cagcagtccctgctggtgccctacatgctgtgccgaaacctgccatatggctttatccag
gagctggcccgcatgacccaccaggaggaggtcttcagacagatcttcgttccaatcctt
caagggctgggtctggctgtgaaagaatgttccttcgacagtgacaactttaaattcccc
ctcatggctttagctgagctctgtgagataaagtttgggaagactcaccccatgtgcaat
ttgatgacatctctgcccctgtggtgtcccaagtccctgggcccggggatgggccgagag
gttcagagactgtccttcctgggagcattcttcagcctgtcggtctttgcagaggatgac
accaaagtgggtgacaagtacttctcgggcccagccatcactatggagaacactcgtgtg
ggtagccaaaccctgcagcactacctggagtcggcccggggtgacttgtttaaaattctc
cacaacatcctactaaatggagagacaagagaggtagcgctcaactacatggcagctctg
gtcaaccgcaatgtgaagaaagcccagatgcagacagacgacaagctggtgtccacagac
ggcttcatgattaccttcctgtcggtgctgcaacagctgagcatgaagatcaagctggag
atggtagacccgtactacattttccaccccctctgccgcctgcaggtcagccgtgaggag
acccggctcaaggccaccatggaagagctcaagccctggctggccgagatacatgacccc
tccaagttgtatgatcccaagttcctcacagagtgtttctttctgacgttgcacacccac
cacctgtccatcctaccaggctgccgacgctacatccgcaggctgagagccattcgcgag
ctcaacaggacggtggaagagctgaagagtagtgagagccagtggaaggactctccgctg
gccagccgacaccgagagatgctgaagagatgcaaaacccagcttaagaaactggtgcgc
tccaaagcctgtaccgatgcgggtcttctggacgagaacctgttacgcagatgtctgcag
ttttacagtatggtcattcagctcatcctacgcatggtggatcctgcctacccacacaca
actctaccactgaatcccgagatccccaaaagctttgctgctctgccagagttttacatt
gaagatgtggctgagttcctgctttttgttgtgcagtattcccctcaggtcctgtatgag
ccctgcgtccagaacattgtcaccttcctggtggtgttcatctgcagtcagaactacatc
cggaacccctacctgatcgccaagctggtggaggttctgtttgtcaccaacccagctgtg
cagccgcgcacccagcgcttctctgagatgatggagaaccaccaactgtccgtcaaacat
ttggtcccagccctcatgaagttctacactgacgtggagcacaccggtgccaccagcgag
ttctatgacaagttcaccatccgctaccacatcagcaccatcttcaagagcctctggcag
aacatgggccaccatggcactttcctggaagagttcaactccgggaaacaatttgtgcgt
tgcatcaacatgctgatcaacgacaccaccttcctgctggacgagagcctggagtccctg
aagcgcatccatgaggtccaggaggagatgaagaacaaggagcagtgggatcagcttccc
agggatcagcagcagagccgccagtcccagctgacccaggatgagcgggtgtcccgctcc
tacctggccctggctacagagacggtcgacatgttccacatcctcaccaagcaggtccag
aagcccttcctccggcccgagttggggcctcgtctggcggccatgctgaactttaacctc
cagcagctatgcgggcccaagtgccgggacctgaaggtggagaacccagagaagtacggt
tttgagcccaagaagctcctagaccagcttactgacatttacctgcaacttgactgtgcc
cgcttcgccaaggccatcgccgacgaccagcggtcatacagccgagagctctttgaggaa
gtgatttccaagatgaagaaagccggcatcaagtccaccatcaccattgaaaaattcaag
ctgctattggagaaggtggaggagatagtcgccaggaactcgcagtccgaaatggactac
agtgacgcacctgacaagtttaaagaccctctgatggacacattaatgactgaccctgtg
atactgccctctgggaacatcatggaccgagccatcatcctccgccaccttctcaactcc
cccactgacccctttaacagacagcctctcaacgaaagcatgctggagtcactccctgaa
ctgaaggagaggatccaggcatggatgagagagaagcaaggccagggacgtttcctctag
DBGET
integrated database retrieval system
