Oncorhynchus nerka (sockeye salmon): 115102712
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Entry
115102712 CDS
T07952
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115102712
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
115102712
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GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Com_YlbF
Motif
Other DBs
NCBI-GeneID:
115102712
NCBI-ProteinID:
XP_029478803
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All DBs
Position
LG20:33359488..33425582
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AA seq
1130 aa
AA seq
DB search
MDEVEDGEEESKFQHPRLRRAGGNSSSGGGGGGGGSIRMKNFTPGGGAVATATRNNSTNN
EPSLLQTENAPAATEPTVASKAIDTTTCLGDNAGRGETNRVAGAETSRAAVTLEVLNAAA
GDGCNSTAPISRMKCNKNGECRRDSGTGSLRSIISNKTAGAGRAEDGGTLRRGACNSARA
SMDGSMTISTTQGHGEVGANPGITPVSTGVPEKKDSRVSFSNAPSRKASSSLHGSTQTQT
TQQPRNSVTFQKPEEGPQIQTEDAEPGGSTFMQRQFSAMLQPGVNKFSLRMYGSQKAVER
EQERVKSAGNWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITFFNDGTTTPWIIFNVIS
DTFFLMDLVLNFRTGIIIEDNSDIILDPKTIKKTYLKTWFIVDFVSSIPVDYIFLIVEKG
IDSEMYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVMRIFNLI
GMMLLLCHWDGCLQFLVPMLQDFPSDCWVSLNKMVNDTWSELYSFAVFKAMSHMLCIGYG
RQAPESLSDIWLTMLSMIVGATCYAVFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHK
LPADFRQKIHDYYEHRYQGKMFDEESILEELNEPLREEIVNFNCRKLVASMPLFANAEPN
FVTAMLIMLRFEVFQPRDYIIREGTIGKKMYFIQHGVCNVITKGTLGMKLSDGSYFGEIC
LLTRGRRTASVRAETYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKKNTILM
HKVQHDLNSGVFNNHENEMIQEIVKYDREMVKLVDLQRPRTMSMTSSVPGGMFSPAGPSG
AGALASLQQAVAMSFCPQGMGPMGGMGMPGMGLMGMPMGMGTGPMGPGPMGLGMASGSGS
GTLQSPRMLRRFQVVHSLSQSPVSASPLQSQPPQMAHATGAFGSAISSPPVQSPLTHQGR
TFQYMGGAGPSGSQLSLVQHHVPSPTHTIQRPSSHKSTHSLHSGTLSQDARALSSSQLSL
PQEGTPAVTPSPPQSTHPSTHASSTSIGPPQPTHPSQPGPSGVGVQVEGRPTGAPQRVAF
ASTPPPGAPGMGAAVVAAGSGIPDSGVPNKDLIDSLPELDSARSRLSSNL
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggtggaggatggtgaggaggagtccaagtttcagcatccgcggctgcgccga
gccggggggaacagcagtagcggtggtggtggaggcggaggaggtagcatcagaatgaag
aactttacgccaggagggggagccgtggccacggctaccagaaataactctacaaacaac
gagcccagcctactgcaaacggagaacgcgcctgctgccactgagcccactgtagcatcc
aaagcgattgataccacaacgtgtctgggagataatgccgggcgcggcgagaccaacaga
gtggcaggggcggagacgtctagagccgccgtcacactcgaggttttaaatgcggcagca
ggtgatggttgcaacagcaccgctccaatttcaagaatgaaatgcaacaaaaacggagaa
tgcaggagggactccgggaccgggagcctgcgctcgatcatctccaacaagactgccggg
gcgggtagggccgaagacggagggacccttaggcgtggtgcctgtaactcagccagggcc
agcatggatggctccatgacaatctccaccacgcagggccatggggaagtgggcgcaaac
cccggcatcaccccggtttccaccggcgtccccgagaaaaaagactccagggtgtccttc
tccaacgcgccgagcaggaaagcctcctcatcgctgcatggctcgacccagacccagacg
acccagcagcccaggaattctgtcaccttccagaagcccgaggagggaccccagatccag
accgaggatgccgagcccggcggaagcaccttcatgcagcgacaattcagtgccatgctg
caacctggagttaacaaattctccttacgtatgtatgggagtcaaaaggcggtggagagg
gagcaagagcgggttaaatcagcgggcaattggattatccacccctacagtgatttcagg
ttctactgggatttcacaatgcttctcttcatggtgggtaacctgatcatcatcccggtg
ggcatcaccttcttcaacgacgggacaaccaccccttggatcatctttaacgtcatctca
gacaccttcttcctcatggacctggtcctcaactttcgcacaggcatcatcatcgaggac
aactccgacatcatcctggaccccaaaaccatcaagaagacgtacctgaagacctggttc
atcgtggactttgtctcctcaatccccgtggattatatcttcctgatcgtggagaagggg
atcgactctgagatgtataagacggccagggccctgaggatcgtacgattcactaagatc
cttagcctactgaggctcctgaggttgtcccggctcatccgctacatccaccagtgggaa
gagatcttccatatgacctatgacctggccagtgcggtgatgcgtatcttcaacctgatt
ggtatgatgctgctgctgtgtcactgggatggctgtctacagttcctggttcccatgctg
caggacttcccctcagactgctgggtctcactcaacaagatggtgaatgacacctggtcg
gagctatattcgtttgcagtgttcaaggcgatgagccacatgctgtgtatcggctacggt
cggcaggccccggagagcctgtctgatatctggctcaccatgctcagtatgatcgtcggg
gccacctgctatgctgtgttcataggccatgccacagcactcatccagtctctggactcg
tcccgacgacagtaccaggagaagtacaaacaagtggagcagtatatgtccttccacaag
ctgccggctgacttccgacagaaaatccatgattattacgagcaccggtaccaggggaag
atgtttgatgaagagagcatcctggaagagctgaatgaaccactcagagaggaaattgtc
aatttcaactgccgtaaactggtggcatccatgccactgttcgccaacgcagagcccaac
tttgtgacagccatgttgatcatgctccgcttcgaggtcttccagccccgtgattacatt
atcagagagggcaccatcggcaagaagatgtactttatccagcatggagtctgcaatgtc
atcactaagggaaccctgggaatgaagctctctgatggctcctactttggagagatctgt
ttgctgacacgtggccggcgtactgccagtgttagagcggagacatactgtcgtctctac
tccctgtctgtggacaacttcaatgaggttctggaggaataccccatgatgagacgggcc
tttgagacagtggccatcgaccgactggaccgcataggcaagaagaacaccattctgatg
cacaaagtgcagcacgacctcaactccggcgtcttcaacaaccatgagaatgagatgatc
caggagatcgtcaagtacgaccgtgagatggtcaaactggtggacctccagagaccccgc
accatgtccatgacttcctctgtccccgggggcatgttctcccctgcaggcccttccggg
gctggggccctcgccagcctccagcaggctgtggccatgagcttctgcccccaggggatg
gggccgatggggggaatggggatgccagggatggggctgatgggtatgccgatgggtatg
gggactgggccgatggggccaggtccgatggggctggggatggcgtctggttcggggtca
gggacgctgcagtccccccgcatgttgcggaggtttcaggtggtccatagcctgtctcag
agcccagtctccgcatcccctctccagtcccagccaccccagatggctcatgcaacaggg
gcgtttgggtccgctatctccagcccaccagtccagagccctctgacgcaccagggacgg
acattccagtacatgggaggagcagggccctctgggtctcagctgtccctggtgcagcac
catgttcccagtcccacacacaccatccagaggccctcctcgcacaagagcacccactcc
ctccactcgggcaccctgagccaagacgcccgtgccctctcctcctcccagctctccctc
cctcaggaaggaacccctgccgtcacccccagccctccccaatccacccacccatccacc
catgcctcctccacctccatcggccctcctcagcccactcaccctagccagccggggccc
tccggggtgggggtccaggttgagggaagacccacgggagctccacagcgtgtggctttc
gcctctactcctcccccaggagcacccgggatgggggcagctgtggtggcagctgggtcg
gggattccggactctggggtccccaacaaggatttgatcgatagcctaccggagttagac
tcagcccggagccggctgtcttctaacttgtga
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