Oncorhynchus nerka (sockeye salmon): 115102716
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Entry
115102716 CDS
T07952
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115102716
Membrane trafficking [BR:
one04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
115102716
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
Ig_3
I-set
LRR_1
ig
LRR_14
LRR_EndoS
Ig_2
LRRNT
LRR_6
LRR_LRWD1
LRR_9
V-set
C2-set_2
Motif
Other DBs
NCBI-GeneID:
115102716
NCBI-ProteinID:
XP_029478810
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Position
LG20:33673076..33728461
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AA seq
627 aa
AA seq
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MTSRAMIGSLGPSVWSLMPWRWVSLWGPALLLVTIISLLPGSCQACPPRCECSAQIRSVS
CQRRRLTSIPEGIPTETRLLDLSRNRLRWVEMGDLAPYPHLEEVDLSENLIATLEPNAFS
NLQSLRVLQLRGNQLKLVPMGAFAKLGNLTTLDLSENKMVILLDYTFQDLRSLRHLEVGD
NDLVYISHKAFSGLLGLEDLTIEHCNLTSISGQTLSYLRSLVTLRLRHLSIAALEDHNFR
KLNNLQGLEIDNWPYLEYISPLSFQGLDLSWLSITNSNITSVPSSSFRNLIHLTHLNLSF
NPITTLEPWAFRELLRLKELIMVNTGLATVEPHSLGGLRQIRVLNFSSNELQTLEEGSFH
SVNSLETLRVDGNPLLCDCRLLWILQRRKTLNFDGRVPVCAGPEEVQGYSLSTFTDSALF
DHFTCQKPKIRNRKLQQVTAREGQPVSFLCSAVGEPAPNIMWISPQRRIITAKSNGRVTV
LPGGTLEIRYAQVTDSGTYMCIASNAGGNDTYFAMLTVRGAPLDAASAFFANRSLYGGEF
FNDTNLNSTRVFLKFTLDLTTILVSTAMGCITFLGVVLFCFLLLFAWSRGRGQRKNNFTV
ETPFRKAEGPAATGSAGGARKFNMKMI
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcagggccatgattggctccctgggccccagtgtgtggtccctgatgccatgg
cggtgggtgagtctctgggggccggccctgctgctggttaccattatatccctgctgcca
ggtagttgccaggcatgccccccgcggtgcgagtgctcggcccagatccggtcagtctcg
tgccaacggcggcgcctcaccagcatcccagagggcatccctacagaaactcgcctcctg
gacctcagccggaaccggctccgctgggtggaaatgggcgacctggcaccgtacccgcac
cttgaagaagtggacttgagtgagaatctcattgccacgctagagcccaatgcgttctcc
aatctgcagagcctgcgggttttacagttgagggggaaccagctgaagctggtacccatg
ggggccttcgccaagctgggaaacctgaccacgctggatctgagtgagaacaagatggtg
attctgttggactacaccttccaggacctgaggagtctgagacacctggaggtgggagac
aacgacctggtctacatttctcataaggccttttctggtcttctggggctggaggacctg
accatcgagcactgcaacctgacgtccatctctggccagacactgtcctacctacgcagc
ctggtcactctgcgattaaggcacctcagcattgccgccctagaagaccacaacttccgc
aagcttaacaacctgcaggggctggagatcgataactggccctatctggagtacatctcc
ccgctcagcttccagggtctggacctgtcctggttgtccatcactaacagcaacatcacc
tccgtcccctcgtcctccttcaggaacctgatccacctcactcacctcaacctgtctttc
aaccccatcaccactctggagccctgggctttcagggagctgctgaggctcaaggagctg
atcatggtgaacacgggcctagctacggtggagccccactccctgggcggcctcagacag
atccgggtcctcaacttctcctccaacgaactccagaccctggaggagggatcgttccac
tctgtaaacagcctggagacgctgcgggtggacgggaacccgctgctgtgtgactgccgt
ctgttgtggatcctgcagagacgcaagaccctcaactttgacggcagggtgcccgtgtgc
gctgggccggaggaggtgcaggggtatagccttagcaccttcaccgactcagcgctcttc
gatcacttcacatgccagaagcccaagatacgcaaccgcaagcttcaacaggtgacggct
cgtgagggccagccagtgagtttcctctgcagtgccgtgggagagcccgcccccaacatc
atgtggatctcccctcagcgccgaataatcacagccaagagcaatggccgcgtcactgtc
ctcccaggagggacgctagagatccgctatgcccaggtcaccgacagtggcacctacatg
tgcatcgccagcaacgccggcggcaacgacacctactttgccatgctcaccgtccggggc
gcgccgctggatgccgcgtcggctttcttcgccaaccgctcgctgtacggtggcgagttc
ttcaacgacacaaacctgaacagcacgcgcgtcttcctcaagttcaccctggacctgacc
accatccttgtctccacggctatgggctgcatcaccttcctaggcgtggtgctcttctgt
ttcctgttgttgttcgcatggagcagggggcggggccagcgcaagaataacttcacagtg
gagacccctttccggaaggccgaggggcctgcggccacgggtagtgccggaggagcccgg
aaattcaacatgaagatgatatga
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