Oncorhynchus nerka (sockeye salmon): 115102728
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Entry
115102728 CDS
T07952
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115102728
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
one03310
]
115102728
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
115102728
Nuclear receptors [BR:
one03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
115102728
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
115102728
NCBI-ProteinID:
XP_029478829
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All DBs
Position
LG20:complement(34179194..34194664)
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AA seq
503 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTSRN
RCQHCRLQKCLVLGMSRDAVKFGRMSKKQRDSLYAEVQKHQKNQECLNQGLPLSREDVAG
GESKGDRHGELSRSYSSGGSSSTLSDLDDIAALPKLFDLPLTPQEAHEYCSLDLQEDHGG
STGNTSNSSSPSSSSPISSNQNSPQQNLLDVTDANGIKHEYQMLSHTHVLLAHTHATLLE
TLPDDCTLMDIERITQSVVKSHLETSQYSSDELKRLTYNRMQYSPEETRNFQCESAESVW
QQCAHHITNSIQYVVEFAKRITGFMDLCQNDQIILLKAGCLEVLLIRMCRAFNATTNTMF
FNGKFASAQLFKALGCDDLVSAVFDLAKGLSRLHLTDEEMALFSAACLLSPDRPWLTDSQ
KVQKLQAKVYLALQHSLHTSGAADEKLDQMVSKLPIMKSICNLHIDKLEFFRLVHPETAY
SFPPLYREVFGSEISLPDSTNNS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatagaagtaataccctgcaagatctgtggggacaagtcctcaggaatc
cactatggagttattacctgtgaaggctgcaaggggttcttccgccgcagccagcagaac
aatgccatgtactcgtgttcccgccagaggaactgtcttattgaccgaaccagccgcaac
cgctgccaacactgcagactgcagaagtgtctggtgttaggcatgagccgggacgcggtg
aagtttggccgtatgtctaagaagcagcgcgacagcctgtacgctgaggtccagaagcac
cagaagaaccaggagtgtctgaaccagggtctgccactgtccagggaagacgtggctggg
ggagaaagcaagggggacaggcacggggagctcagtcgctcctacagcagcgggggctcc
agctccaccctgagtgacctggatgacatcgcagcgctccccaaactgtttgacctcccc
ttgaccccacaggaggcccacgagtactgcagcctggacctgcaagaagaccacggcgga
agcactgggaacacctccaattcttcatcaccatcatcatcctcgcccatttcgtccaat
cagaattctccccagcaaaatctactggatgtcaccgacgccaatgggatcaaacacgag
taccagatgttgtcgcacacacacgtgctcctggcacacacacacgccacactgctagag
acactgcctgatgactgcactctaatggatatagagcgtatcacccagagtgtggtcaag
tcccacttggagacgagtcagtacagctctgacgaactgaagaggctgacatacaatcgg
atgcagtactcacctgaggagactcgcaacttccagtgcgagtctgcagagtctgtgtgg
cagcaatgtgcccaccacatcaccaattccatccagtacgtggtggagtttgccaaacgc
attacaggcttcatggacctgtgtcagaatgaccagatcattctgctcaaagcaggctgt
ctggaggtgctgttgattaggatgtgcagggcatttaacgccaccaccaacaccatgttc
tttaatggcaaatttgcctctgctcagctcttcaaagccctcggttgcgatgacctggtc
agtgccgtgtttgacctggctaaagggctctcccgcctgcatctgaccgatgaggagatg
gctctgttcagtgccgcttgcttgctgtccccagaccgaccatggttaaccgacagccag
aaggtccagaagctacaggcgaaggtctacctggctctgcaacacagtctgcacacgagc
ggggctgccgacgagaagctagaccagatggtatccaagttgccgataatgaagtccatc
tgtaatctccacatcgacaagctggagttctttcgtctggtccaccccgagaccgcatac
agcttcccaccactctaccgggaagtgttcgggagtgagatttctctccccgactctaca
aacaactcctag
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