Oncorhynchus nerka (sockeye salmon): 115102742
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Entry
115102742 CDS
T07952
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 2-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04814
Motor proteins
one05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115102742
09142 Cell motility
04814 Motor proteins
115102742
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115102742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115102742
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115102742
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
115102742
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
115102742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Dynein_IC2
Beta-prop_EML
WDR55
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
EIF3I
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
WD40_RFWD3
Beta-prop_DCAF4
Nbas_N
Motif
Other DBs
NCBI-GeneID:
115102742
NCBI-ProteinID:
XP_029478854
LinkDB
All DBs
Position
LG20:34826421..34836677
Genome browser
AA seq
631 aa
AA seq
DB search
MADKQDKSELKAELERKKQRLAQIREEKKRKEEEKNKKKDGSDSKREGGAADDSSDLEKK
RREAEALLQSMGITPDIPNTKSVGSESGSQDSGDGNSRTLPWDPDPSTLQLYSDSELLGR
GFRLGIAKVTQVDFPPKEMVSYSKETQTPADTQTHTQAKPAEEEEEEEEEEEMVDPKPAE
DSQEEKADEEEKQEEVPPKELTEEEKMHLLNTEEFMAFFDRGSRIVERVLSERVDVCFDY
SGRDLEDKEGEMQAGAKMSLSRVFSNERWSKNRVVTCLDWSPQYPELLVASYNNNEDVPH
EPDGVALVWNMKYKKTTPEYTFHCQSAVMSAAFARFHPNLIVGGTYSGQIVLWDNRSNKR
TSVQRTPLSASAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWNLDMLSQPQDSLELVFK
QSKAVSVTSMAFPLGDVNNFVVGSEDGSVYTACRHGSKAGISDVFEGHHGPVTGLSCHSA
GGPVDFSHLFISASFDWTVKLWTTKSTHPLYLFEDSCDYVYDVMWSPIHPALFACVDGSG
RLDLWNLNNDTEVPSASVVVDGSPALNRVRWAHSGREIATGDSDGQVLVYDVGEQICVPK
ADEWTRFVRTLVEINENRDEGDELAAQRLLV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaacaggataagagtgagctgaaagcagagctggagaggaagaaacaacgc
ctggcccaaatcagagaggaaaagaagagaaaggaggaggagaagaacaagaagaaggat
gggtctgactcgaagcgggaagggggtgcagcagatgactcttctgacctggagaagaag
aggagagaggctgaggctctgctgcagagcatggggatcacccctgatatacccaacacc
aagtcagtgggcagcgagtctggaagccaggactctggagatggaaactctaggacatta
ccctgggatcctgacccctctactctgcagctgtactctgactctgaactactggggcga
ggttttaggcttggcatagcaaaggtgacccaggtggatttccctccaaaagagatggtg
tcctactccaaggaaacacagacccccgccgatacacaaacacacacccaggctaaacca
gcagaggaggaggaggaggaagaagaagaggaggagatggtcgatcccaagccagcagag
gactcccaggaggagaaagctgatgaggaggagaagcaggaagaagtccctcccaaggag
ctgactgaagaggagaagatgcacctgctcaacactgaggagttcatggccttcttcgat
cgagggagcaggattgtagagcgggttctctctgagcgagtggacgtctgcttcgactac
agtggccgagacctggaggacaaggagggtgagatgcaggcgggggctaagatgtctctg
agtagggtgttctctaacgagcgctggtccaagaacagagtggtcacctgtctggactgg
tctcctcagtaccctgagctgctggtggcctcctacaacaacaatgaagatgttcctcat
gagccggacggagtggctctggtctggaatatgaagtataagaagaccacacctgaatac
accttccactgccagtctgcggtgatgtcagcggcgttcgccaggttccatcctaacctg
attgtgggtgggacttactcaggccagatcgtcctatgggacaacaggagcaacaaaaga
acatctgtacagagaactcccctgtctgcatccgctcacacgcacccggtgtactgtgtg
aacgtggtcgggacccaaaacgctcacaacctcatcagcatctctactgacggaaagatg
tgctcttggaacctagacatgctgtctcaaccacaggacagtctggagctggtgtttaag
cagtctaaggcagtatcagtgacctccatggcattccctctgggcgatgtcaacaacttt
gtggttgggagtgaagatggatcagtctacaccgcctgccgccacgggagtaaggcaggc
atcagtgatgtgtttgagggacaccacggtccagtcactggactgagctgtcacagtgcc
gggggtcccgtggatttctcccatctcttcatctctgcttccttcgactggaccgttaag
ctgtggaccaccaagagtacccatcctctgtatttgtttgaggacagctgtgactatgtg
tatgatgtcatgtggtctcccattcaccccgccctcttcgcctgtgtggatggatcagga
cggctggacctgtggaacctcaacaacgacacagaggtgcccagtgccagtgtggttgtg
gatgggtctcctgccctgaaccgtgtgcggtgggctcactcagggagagaaatcgctaca
ggagactcagacgggcaggtgctggtctacgacgtaggagagcaaatctgtgtgcccaaa
gcagatgagtggacccgttttgtgcgcacgctcgtggagatcaacgagaaccgagacgaa
ggagacgagctcgccgcgcagcgcctactcgtctga
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