Oncorhynchus nerka (sockeye salmon): 115102779
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Entry
115102779 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115102779
09122 Translation
03013 Nucleocytoplasmic transport
115102779
03015 mRNA surveillance pathway
115102779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115102779
03041 Spliceosome [BR:
one03041
]
115102779
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115102779
Spliceosome [BR:
one03041
]
Complex C
Other components
EJC/TREX
115102779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
115102779
NCBI-ProteinID:
XP_029478922
LinkDB
All DBs
Position
LG20:36551154..36586751
Genome browser
AA seq
1982 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAVEDDDTDQEDHTQGNNSSA
CAAPDQDDLPVLVDQHKPLGPSEGEGLAGPAGEGEGHRAKDGHVSGPPASTSPTSAPAAV
ASLSVCVADGEQRPERVPTSSQVPADSDDDSDGGDEDGEDEDWDSGARRRNLGEPPRGQL
ARERSEGSRQPPQHNPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGELPARQRT
SSTSSSGSSSSGSRSSSPEPQSNAERKPGPLTLLARKMASEGAFSGVGWHGRGEAERQDN
NAATATIFPGRGPQEGTVSAITHTANAAASLPFPSLVPVTNQSVLGGHISHSQVPVSVLR
PTIMEERDSAWQQENKERELQAESEREKALEQERLRAVELERQRIFEQQRAMEQERERAL
EREREEREKALDAERKERERALERERAQALEQEREEREKALAEEREKSEARERALELEKA
VELERQRAMEREQALQQEREERERAKAFEREKRERALEREQVLEQERVETARALEQERVE
MEKALERERQERERALEREQLEREKALEMERIEREKALEQERVEKEKALELVRQKALKRE
QEERQKVLELERQKALELERQEALELERQKALELERQKALELERQKALELERQKALELER
QKALELERQEALELERQEALELERQKALELERQKALELERQKALELERQKALELERQKAL
ELERQTALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELGE
AGKRWSWRGRSAGAGEAESAGAGEAESAGAGEAESAGAGEAGSAGAGEAGSAGAGEAGSL
ELERQKALELERQKALELERQTALELERQTALELERQTALELERQTALELERQTALELER
QTALVREQEREKALERVEKEKALELERQKALERELEEREKDREEKARALHQERIEREKER
VERGKALEREREEKESALEQKALQREKEERESVLEQDKERAMVAERESHLPPWKRGREIG
LTPLPTPPLSTGAGRMVATEEGGEPHVPSLPQTASRDNQPVESGTPLSPTIATPLSPQSS
FKKFRFLRDPPVLSPSCSASLVIKRPRTFSDSPHTQASALQSPRKPGEQEQESTLQGSKL
SSGQAASQMPARQGFLVSGPTAADTSDTTGPETPVIATLGKSPEEEKANELVSEERVLAD
KETNKQEVGEIARGAKRVDAGNVPSGPAESVVPPSPPPEEGNVDRGRERSQKKQEKRGRR
ASSSSDSSDSDSGSSSSRSSGSSSSSQGKTRTTPSGRKPEKPQTKTISQDKETVSQLEES
KESPKAPQRKNRVPGEKDMTIDGARHGKKFFVGIPAGQDNEQKDSEGEEEMTDTTSEVKE
AAMAEPERVPESSEESLTPKAFTARRISLSSSKASPGVVSAEGEAESGAGPGRKRRWGSS
TAVTAKKPSISITTDSLKSLIPDIRLSPGQEAVVDLHPEEAHLSGGEEDREQGEQDFKIR
RTVTQVVLSETQENGPKESKRSENMEDREDGVEVKSDREEKMDDSFQRDSMETQSPSPPI
HDMEMNTVTPSDTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKVSNIVHLSNLVRPF
TLGQLKELLSRTGTVLEDGFWIDKIKSHCYVTYSSAEEAVATRAALHGVKWPQSNPKFLC
VDFSQQEELDFHRGLPPPGGAGEEERGASSVPGRGRGAALPPLLPERDQWAEREREMERR
ERTRAEREWDRDKVRDFGPGKPGEDAGPRRSRSRERKRKERKTDKKEKAAEEAPAKLLDD
LFNKTKAAPCIYWLPLTEEQFTQREVARQERRKEREKRRKEQQEEEEKKREEERKERIKA
SGERGEGDRDRERDRERGKDRDRDREGDKHRESTHRRPGGNSAGVGRRSRSRSDPPPRDR
RR
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacactggacgggaggccgctacaatctctacgggtggcg
gatttgaaagctgctttggaggagcgggggcttcctaaaagcggacagaaaaatgctctc
attaagaggctcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaatagcttcattaag
cagtatctggcaaaacagcaggagctcttgaggcagcgtcttgagaaagaggcccgggaa
gcagtcgaagatgatgatacagaccaagaggaccacacacagggcaataacagctctgcc
tgtgctgccccagaccaggatgacttacccgtgttggttgaccagcacaagccacttggc
ccctccgagggagagggactagcaggccccgcaggcgagggagagggacacagggccaaa
gacggccatgtgtctggtccacctgcctctacctctcctacctctgcccctgctgccgtt
gcttctctgtctgtgtgtgtagctgatggtgagcagcgaccggagagagtcccaacctct
agccaagtcccagcagatagcgatgatgacagcgacggaggtgacgaggatggcgaggat
gaggactgggatagcggtgccaggaggaggaatctaggagagccaccaagaggccagcta
gcaagagagaggtctgaaggatcccgacaacccccacagcacaacccccccctgttgtct
ccgcagcttcgacagcctacccctcccccatcccctcccccagagttatcattcccactg
cctgatacccctaaacaaagcccccctagtccaggtgagctcccggctaggcagcgtact
tccagtacctccagctctggctcctctagcagtggcagtcgtagtagcagtccagaacca
caaagcaacgcagagcgcaagcctggcccactgaccctgctggcacgcaagatggcatca
gaaggtgccttctctggagttgggtggcatggacgtggggaggcagaaaggcaggacaac
aatgctgcaactgcaacaatatttcctggtagaggtcctcaagagggcacagtgtctgcc
atcacccacacagccaatgctgcagccagtttgcccttccccagtctggttccagttacc
aaccagagtgtccttggaggccatatatcccacagtcaagttcctgtgagtgtgcttagg
cccactataatggaagagagagattctgcatggcaacaagaaaacaaggaaagggagctg
caggcagagagcgaaagagaaaaggcccttgagcaagagagacttagagccgtggagctg
gaaagacagagaatatttgagcaacagcgtgccatggagcaagagagggaaagagctttg
gagcgagagagggaggagagggagaaagccttggacgctgaaaggaaggagagggaaaga
gctttagagcgagagagggcacaagctcttgaacaagagcgggaggaaagagagaaagct
ttggcagaagagagagagaagtctgaggcaagagagcgggcccttgagcttgagaaggct
gtggagttagaaaggcagagagccatggaacgagagcaagctttgcagcaagagagagag
gagagggaaagagctaaagcttttgagcgggagaagagggaaagggctcttgagcgggag
caagttcttgaacaagaaagggtggagacagcgagagcgttggagcaagaaagggtggag
atggagaaagccttggagcgagagagacaggaaagagagagagccttggagcgagaacag
ttggagagggagaaagcattggagatggagcgtatagagagggaaaaggctttggagcaa
gagcgagttgagaaggagaaagctttggagctagtgaggcagaaagctttgaagcgggaa
caggaggagaggcagaaagtgctggagctagagaggcagaaagcgctggagctagagagg
caggaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctg
gagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagagagg
cagaaagcgctggagctagagaggcaggaagcgctggagctagagaggcaggaagcgctg
gagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagagagg
cagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctg
gagctagagaggcagacagcgctggagctggagaggcagaaagcgctggagctggagagg
cagaaagcgctggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctg
gagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctgggagag
gcaggaaagcgctggagctggagaggcagaagcgctggagctggagaggcagaaagcgct
ggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctggagag
gcaggaagcgctggagctggagaggcaggaagcgctggagctggagaggcaggaagcctg
gagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctagagagg
cagacagcgctggagctagagaggcagacagcgctggagctagagaggcagacagcgctg
gagctagagaggcagacagcgctggagctagagaggcagacagcgctggagctagagagg
cagacagcgctggtgcgagaacaggagagggagaaagcgctggagcgagttgagaaggag
aaagctttggagctagagaggcagaaagctttagagcgggaactggaggagagggagaaa
gatagggaggagaaggcaagggctttgcaccaagaaagaattgaaagggagaaagaaaga
gtggagaggggaaaagctttggaacgtgagagagaggagaaggagagtgctttagaacag
aaggccctgcagagagaaaaagaagagagggagagtgttttggaacaagataaggaaagg
gctatggtggctgagagggagagtcatcttcctccatggaaacgtggtcgtgagattggt
cttacccccctgcccactcctcccctctccacaggagcaggtagaatggtggcaacagag
gagggtggggagccccacgtgccatccctaccccaaacagcatcgagagacaaccagcca
gttgaatctggtacgcccctgtcaccaactatagcaacgcctctgtcaccccagtcctcc
ttcaagaagttccgtttcttgagagaccccccagttctgtccccatcttgctctgcatcc
ctggtcatcaagaggccccgtacattctctgacagcccccatactcaggcctccgctctc
cagtccccaagaaaacctggggaacaagagcaggaaagtactctgcaggggtccaagctt
tcttctggacaggcagcatcacagatgcctgcaagacaggggttccttgtttctggacca
actgcagcagacacgtcagacacgacagggccagagaccccagtgattgccacactaggc
aagagtcctgaagaagaaaaggctaatgagcttgtgtcagaggagcgtgtcttagcagat
aaggagacaaacaaacaggaagtgggagagatagccagaggtgctaaacgggtggatgca
ggaaacgtcccctcgggtccagcagaatctgtggtacctccctcacccccaccggaagag
ggcaatgtagaccggggaagggagagaagtcaaaagaaacaagagaagcggggaagacga
gcttcctcatctagtgactcctcagattctgactctgggtcatcctcctcacgctcgtct
ggttcatcttcgtcctcccagggcaaaactcgcaccactcccagtggtagaaagcctgag
aaacctcagacaaaaaccatatcccaggataaggagacagttagtcaacttgaggagtca
aaggagtccccaaaagcaccccagcgcaaaaatcgagtacctggggagaaggacatgacc
atcgatggagccagacacggcaagaaattctttgttggaatacctgctggacaagacaat
gagcagaaggacagcgagggagaggaggaaatgacagacactacaagcgaggtgaaggag
gctgccatggctgagcctgagcgggttcctgagagcagtgaggagagtctgacgccaaag
gcattcacagcccgtaggatctccctgagcagcagcaaggcctctccaggtgtcgtcagt
gcagagggcgaggcagagtctggggccggccccgggaggaagaggaggtggggttccagc
actgcggtcacagccaagaaaccatccatcagcatcaccacagactcactgaagtctctg
atcccagacatcaggctgagtccaggacaggaggcggtggtggatctgcacccagaggaa
gctcacctctctgggggagaggaggacagggagcagggcgagcaagacttcaagatcaga
cgcacggtcacacaggtggtcctgtccgagacccaggagaatggaccgaaggagtccaag
aggagtgagaacatggaggacagagaggatggagtggaggttaaaagcgacagagaggag
aagatggacgactcattccagagagactccatggagacacaatccccctctccccccatc
catgacatggagatgaacacagtgaccccaagtgacaccctgatccgtcgctccatcagc
cagcagaagtctggcgtgtccatcaccatagacgaccctgtccgcacggccaagcagccc
tctcctccacgaggcaaagtgtccaacatcgtccacctgtccaacctggttcggccgttc
accctgggtcagctgaaggagctgctcagcaggactggcaccgtgctggaggacggcttc
tggatcgacaagatcaaatctcactgctacgtcacctactccagtgcagaggaggcagtg
gccactcgtgcagcactacatggggtgaaatggcctcagagcaaccccaagttcctctgt
gtggacttcagtcagcaagaggagcttgacttccacagaggcttgccaccccccgggggg
gctggagaggaggagcggggggcttcatcggtgcctggccgaggtcggggggcggccctg
ccccctctcctgcccgagcgtgaccagtgggcagagcgagagcgtgagatggagcgcagg
gagaggacccgggcggagagggagtgggacagggacaaggtccgggactttggtcccgga
aaacctggagaggatgcgggccccagacgatcgcgctccagagagaggaagcgcaaggag
aggaagacggacaagaaagagaaagctgcagaggaagcccctgccaaactgctggatgac
ctgttcaataaaaccaaagcagccccttgtatatactggctccccctcacagaagagcag
tttacacagagggaagtagctcgacaagagaggaggaaggagcgagagaagaggaggaag
gagcagcaagaggaggaggagaagaaaagggaggaagagcgcaaagaaaggataaaagca
tctggtgaaagaggcgagggggacagggacagagagcgagacagggaaaggggcaaagac
agggaccgagacagagagggtgacaaacacagagaaagcacccaccgcagaccagggggc
aacagtgcaggggtgggcagacgctctcgcagccgcagtgatcctccacctcgtgacaga
cgacgctag
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