Oncorhynchus nerka (sockeye salmon): 115102959
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Entry
115102959 CDS
T07952
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115102959
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115102959
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115102959
03029 Mitochondrial biogenesis [BR:
one03029
]
115102959
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115102959
Membrane trafficking [BR:
one04131
]
Autophagy
Autophagosome formation proteins
ULK complex
115102959
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
115102959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
115102959
NCBI-ProteinID:
XP_029479298
LinkDB
All DBs
Position
LG20:47207504..47225005
Genome browser
AA seq
1634 aa
AA seq
DB search
MKLYVFQVNNGSTLAFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYINYQQ
EFEDIKLKLTKLGTAVSVMANIPLLECLTRHSYKECIEKSCSTPNKDSDETEEEKSTDSV
LCPSPTKLPASFSAPGAGDSPDTAETQESSEMTDSSGLRAALEEADSPERANPLSFNVTL
LDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLAECRDTIAKLDNQNMKAIKGLEDR
LYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIMLTNHR
KLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVRVVDA
LSTVPQMYCLAVVEVVRRKLFIGHYREWACALVKDGKHLYETEKYKRETFGKLFRKCFLR
NRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRVPTLCDFEP
LHLHVEMLQQLVLASQAASVDEMSQTITDLLSEQRGSCSQSAQRSTAAVTPQSDSTPGTS
SPMTPSSLSLPGPPCQPLPGPTALEDLSPDSIDAQTFDFETIGHPNMDPVLQQAGSLDLD
SLAESPESDFLSAVNEFVIENSPTPISDPTSPEMMVESLYSSVINAIDSKRMHDTTTLER
ENSKVATLNLSIEKYRSAAEESQANLRSVKDDLYRFRGLVLKEQRDFGFALKTMTIEVRN
MVDTIRKREEEELREQHQAELLSVQQDHEKQLQTLTEENRVNRNIVKDVQRAMLELEGLV
EHKEKELTQLEAERQRWTEAESGHTQSLSVLEHKISDQAHEVLTVAASRDSLYSQLETLH
IEIERGQQKIRQELEGAEQVHLQELEERMRQQHQAQLDTLARENQEAMECLATVNRVKLS
EVADRHAASLTERDGQLRDLEARATELADLRCKLEVELALKESEMEVVRLLYEEAKQGQQ
EANVRKATVEAETQSLNEQLVQVNGQLHAKNEEYEKGLAELRTLMRMEKDQCISELVGRH
EEERNQRRSELTALKQQAQDAGRSHAEQLQNLQLDLDLQTAALRNDKEVQQRSFEEQEQH
LRTVICDLQTENDLLTKRLEQDTQAAQEHLEKEESLKAAVPDAFKDFEQQKEEMEKRLLD
KIRQLENELRERQSSERVAGLSKVQTESRGSEAGAPLSLDSALQERLQQETASLHTQLEL
LERRKNEEMQNLKTSLIAEQQTNFNTVLMREKLKKEQIISELTEELRKVTQQQEKDKGLI
EMLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNPLALEPTGAGARLGSGACPGPG
TEVGAGACSSELFPDPDRLASVAATREDDRVDSAVEASMVTVHDNILMMSEEKQRILLLE
RTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTV
GPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGT
KFYRVKAVPWNKKV
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcactctggcatttgacacagagctc
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaaatacaagattgcaacc
cagcatcaagttctggttgtcaatggaggggagtgtatggttgcagagaggagagtctgc
agctacagtgccggcactgacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgacgatccctaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagtcgccaagaaactttgctctttctgcgaacgcctggtt
catgatgaacacctccaacaccaaggttgggctgctatcatggcaaacctggatgactgc
accctgtcttatcagaagctactgtggaaatttgacacggcgtacattaattatcaacaa
gaatttgaggatatcaaattgaaactgacaaaactggggaccgcagtttcagtcatggcc
aatatccccctgctggagtgtctgacccgccacagctacaaagaatgcatagagaagtcc
tgctccactccaaacaaggactctgacgagaccgaggaggagaagtccaccgactcggtg
ctctgcccctcccccaccaagctacctgcatcgttctctgctccgggggcgggggactcg
cccgacaccgccgaaacccaggaaagcagtgagatgacggacagtagtgggctgagggca
gccctggaagaggcagactctccagagagggccaaccccctgtccttcaacgtcacactg
ctggactggattaatgttcaagacaggcccaatgacgtggaatcagtcgtgaggaaatgc
tttgactccatcaataggctcgacccacgggtcattcaaccattcttagcggaatgtcga
gacacgattgccaaactggataatcagaacatgaaagccatcaaaggacttgaggacagg
ttatacgctctagaccaaatgatagcgagctgtaaaaagttggtcaatgaacagaaggaa
cttgctcagggctttctggccaatcagaagcgtgctgagaacctgaaggatacgtccgtg
ctgcctgacctgtgtctcagtcacgccaatcagctgatgatcatgctgaccaaccacagg
aagctgctggacatcaaacagaagtgcaccactgccaaacaggagctggcgaacaaccta
caagttcgtctcaaatggtgctgctacgtgatgctgcacgcggaccaggatggggagaag
ctgcaggccctgctgaggctgttgaccgagctgatggagagagtccgggtggtggacgcc
ctcagcaccgtgcctcagatgtactgcctggccgtggtggaggtggttcgcaggaagctc
ttcatcggccactacagagagtgggcctgtgctctcgtgaaggatggaaagcatctctat
gagaccgagaagtataaaagggaaacgtttggcaagttgttcaggaaatgttttctccga
aatcggttgtttagaggacttgactcatggccccccacttcattttgcacaagaaagccc
agaaagtttgactttgagcttcccgatatttcccttggtgacctgcagtacttaaagacc
tgttgtcctacagaggtgcagcctttcctcagggttccaacactgtgtgattttgagcct
ttgcatctgcatgtggagatgcttcaacagttggtccttgcttctcaagctgcaagtgtg
gatgagatgtctcaaactatcaccgatttactcagcgaacaaagggggtcgtgcagccag
agtgctcagagatccacggcagcggtgaccccacagtccgacagcaccccagggacttcc
tcccccatgaccccctcctctctcagtctcccggggcccccctgccagcccctccctggc
cccaccgccctggaggacctgtccccggacagcatcgatgcccaaacctttgactttgag
acaattggccaccccaacatggaccccgtcctgcagcaggccggctccctggacctggac
tccctggctgagagccccgagtcagacttcttgtcggcggtcaacgagtttgtgatcgaa
aactcgcccacccccatcagcgaccccaccagcccagagatgatggtggagtcgctgtac
tcgtcggtcatcaacgccatcgacagcaagcgcatgcatgacaccaccacattagagagg
gaaaactccaaggtggctacgctgaatctgagcatcgagaagtaccgctctgctgccgag
gagtcccaggccaacttgcggagcgtcaaggatgacctgtaccgcttcagaggcctggtg
ctgaaggagcagcgagactttggcttcgccctgaagaccatgaccattgaggtgcgcaac
atggtggacaccatccgtaagagggaggaggaggagctgagagagcagcaccaggccgag
ctcctctctgtgcagcaggaccacgagaagcaacttcagaccctgacggaggagaaccgg
gtcaaccggaacatcgtgaaagacgtgcagcgggccatgctggagctggaggggctagtg
gagcacaaggagaaggagctgacccagctcgaggctgagaggcagcgctggactgaggcg
gagagcggacacactcagagcctcagtgtcctggagcacaaaatcagcgatcaggcccat
gaggtgctgactgtggctgcatccagagactccctgtacagccagttggagacactccac
attgagatcgagcgcggccagcagaagatccgccaggagctggagggggccgagcaggtc
cacctgcaggaactggaggagaggatgaggcagcagcatcaggctcagctagacaccctg
gcccgggagaaccaggaggccatggagtgcctggcaacggtgaacagggtcaagctgagt
gaggtcgcagaccgccacgccgcctctctgacagagagggacggccagctgagggacctg
gaggcccgggcaaccgagctggctgacctacgctgcaagctggaggtggagctggccctg
aaggagtcagagatggaggttgtgaggcttctctacgaggaggccaagcaggggcagcag
gaagccaacgtgaggaaggctactgtagaggcagagacccagtccctcaacgaacagcta
gttcaggtcaacgggcagctgcatgctaagaacgaagagtacgagaagggcctggccgag
ctccggacgctgatgcgcatggagaaagaccagtgcatctcggagctggtgggcaggcac
gaggaagagaggaaccagcgccgcagcgagctgaccgccttgaagcagcaggcccaggac
gcaggaaggagccatgcagaacagctgcagaacctccaactagacctcgacctgcagacg
gcagcactgcgcaacgataaggaagtgcagcagaggagttttgaggagcaggagcaacac
ttgaggactgttatctgcgatttgcagacagaaaatgatctgctcaccaaaagattagag
caggacacccaagcagcccaggaacatttggagaaagaggagtccttgaaggctgcagta
ccagatgccttcaaagactttgagcaacaaaaggaggagatggagaaaagacttctagac
aaaattagacaacttgaaaatgagcttcgggaaagacaatcctcagaaagagtggcgggg
ttgtcgaaggtgcagacagagagtcggggatccgaagcaggagctcctctctccctggac
tctgccttgcaggagcgtctgcagcaggagacggcctccctgcacacccagctggagctc
ctggagaggaggaagaatgaggagatgcagaacctcaagacctccctcatcgcagaacaa
cagactaacttcaacactgttctaatgagagagaagctgaaaaaggaacagatcatcagt
gagctcacagaggagctgcggaaggttacccagcagcaggagaaggacaaaggtctgata
gagatgctgtctgaggaccgggccatcgtcatgcaggagaagaagcagttggaggaggat
ctgaaccggctgcgcagcacagccctggtgtcctctgcctactacagccctaacccctta
gctctagagcccactggagccggggctagacttggatctggagcatgtcctggacctggg
actgaggttggggctggagcctgctcctcggagctcttccctgacccagacagactggcc
tctgtggctgccaccagagaggacgacagagtggactcggctgtggaggccagcatggtg
actgtgcacgataacatcctgatgatgtcggaggagaaacagcggatactgttacttgag
aggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcaa
agcatgtcctcggtgtcgtcacggcattctgagaaaattgccatccgagatttccaggtt
ggcgacttggttctgatcatcctcgatgaaaggcatgacaactatgtgctattcaccgtg
ggtcccaccctgtacttcctccactctgagtccctcacggccctggacctcaaaccagat
cctatgtttacttcagcatcaggagcctcaagacggccgtgggttctcggaaaagttatg
gagaaagaatattgccaggcgaaaaaggctcaaaaccggttcaaagttcctttgggcacc
aagttctacagggtgaaagctgttccgtggaacaagaaagtatag
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integrated database retrieval system
