Oncorhynchus nerka (sockeye salmon): 115102980
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Entry
115102980 CDS
T07952
Name
(RefSeq) exosome complex component RRP41-like
KO
K11600
exosome complex component RRP41
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115102980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115102980
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115102980
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
115102980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115102980
NCBI-ProteinID:
XP_029479351
LinkDB
All DBs
Position
LG20:48300604..48302284
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AA seq
245 aa
AA seq
DB search
MAGLELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRG
SRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQ
IDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESG
GGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQHLQEVS
ALTGE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctggagttattgtcagatcaaggatatcgtcttgatggaagaaaagctgct
gaactgcggaaagtacaagctcgtatgggtgtatttgcccaagctgacgggtctgcgtac
atagaacagggaaataccaaagcgctggcagttgtgtatggtcctcatgaagtgcgaggc
tcccgcagcaagacactccatgaccgtgctgtcatcaactgccaatacagcatggctacc
ttcagtacagctgagaggaagagaagaccccacggggaccgcaagtccacagagatgagc
cttcacctcaagcagactttcgaggcagcagtgttgactaatctgtacccacgctctcaa
atagacatttatgtcaagatcttgcagtcagatggagggaactacagcgcgtgtgtgaac
gccgctactctggcagtagtcgatgcgggcatccccatgcgtgactatgtgtgcgcctgc
actgcaggctttgtggatgagactccattggcagacctgtgccatgctgaagagagtgga
gggggcacatcactggccctggcattgttgcctcgtggcgggcacattgccctgctacag
atggacgcccgactccaccaggaccacctagagacactgatggaggcggcaatgacggcc
tgtaagggcgtcagcaaagtgttggacgaggtggtgaggcagcatctacaggaggtgtct
gcgctgactggagagtga
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