Oncorhynchus nerka (sockeye salmon): 115102985
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Entry
115102985 CDS
T07952
Name
(RefSeq) interferon regulatory factor 4-like isoform X1
KO
K09445
interferon regulatory factor 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115102985
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
115102985
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
MH2
Motif
Other DBs
NCBI-GeneID:
115102985
NCBI-ProteinID:
XP_029479358
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Position
LG20:complement(48871766..48881577)
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AA seq
476 aa
AA seq
DB search
MCFLTEMDLEGDSGLSVSCGNGKLRQWLIDQINSSSYPGLVWENGEKSIFRIPWKHAGKQ
DYNRDEDAALFKAWALFKGKHREGVDKPDPPTWKTRLRCALNKSNDFDELVERSQLDISD
PYKVYRIIPEGAKRGIKMAETTLHMSSESNYPMHSLYPTLHSQVSGSYIVPQERKEWKDY
SHTQDHQQQPQPQHHQPPHVELQYSQCHYPSPLSRLWHTGPHTDNGYQFTGSFYSYSSSE
SHPTAFTMDHNMATLSDFRLHVSLFYREALVKKVTTSGPEGCQITSSSSSSSSSSSPSSP
CPGDKLYSGAEVVLFPSPYPESQRRGAEKLPNVLERGVLLWMASDGLYAKRLCQSRVYWE
GPLAPYTDKPNKLEKEQTCKLFDTQQFLTELQGYAQHGRPMPRHQVVLCFGDEYPDPQRQ
TKMITAQVEPMFARELLYFTQQNSSHYLRDYELQGHTESSPPAPGDYQRTLQHMQE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtgctttttgacagagatggacttagagggggacagcggtctgtcagtgagctgcggc
aacgggaaacttagacagtggctgatcgatcagattaacagcagtagctatcccggactg
gtttgggagaatggcgagaaaagcattttcaggatcccgtggaaacatgcgggcaaacag
gactacaatcgagacgaggatgctgcactcttcaaggcttgggcattgttcaaagggaaa
cacagggaaggagtggacaaaccagacccccccacatggaagactagactgcgatgtgct
cttaacaaaagtaatgactttgacgagctggtggagagaagccaacttgatatatcagac
ccttacaaagtctacagaatcataccagagggagctaagagagggatcaagatggcagag
acaacgttacatatgagctcagagagcaactaccccatgcactctctgtacccaactcta
cacagccaggtgtctggcagctacatagttccccaggagaggaaggagtggaaggactac
agccacacacaggaccatcagcagcaacctcagcctcagcaccaccagccaccccacgtt
gagctgcagtatagccagtgccactacccatcgccactcagccgactgtggcacaccggg
ccacacacagataatggttatcagttcactggctccttctattcatactcctcctcagag
tcccaccccacagcatttacaatggaccacaacatggccaccctttctgacttccgactg
catgtgtccctgttctaccgtgaggctttggtcaagaaggtaaccacctctggtcccgaa
ggctgccagatcacctcgtcttcctcctcctcttcctcgtcttcctctccctcctccccc
tgccctggggacaagctgtacagcggtgcagaagtggtgctgttcccgtccccttacccc
gagtcacagaggaggggggcggagaagctacccaacgtcctggagaggggcgtgctcctg
tggatggcgtcagatgggctctatgccaagcggctttgccagagccgagtgtactgggag
ggcccgctggccccgtacacggacaaacccaacaaactggagaaagaacagacctgcaag
ctgtttgacactcagcagttcctcactgagctgcaggggtatgcccaacatggccgtccc
atgcccaggcaccaggtggtgctgtgtttcggtgacgagtacccagatccccaacgccag
accaagatgatcacagcacaggtggagccaatgtttgccagggaactgttgtacttcacc
cagcagaacagcagtcactaccttagggactatgagctccagggacacacagagagctcc
cctccagctccaggagactaccagaggaccctccaacacatgcaggagtaa
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