Oncorhynchus nerka (sockeye salmon): 115103003
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Entry
115103003 CDS
T07952
Symbol
ss18
Name
(RefSeq) protein SSXT isoform X1
KO
K15623
protein SSXT
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115103003 (ss18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115103003 (ss18)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115103003 (ss18)
GBAF(ncBAF) complex
115103003 (ss18)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
115103003
NCBI-ProteinID:
XP_029479390
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Position
LG20:50365063..50385954
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AA seq
415 aa
AA seq
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MSVAFAPHRQRGKGDITPAGIQKLLDENNQLIQCIMDFQSKGKTAECSQYQQMLHRNLVY
LATIADSNQNMQSLLPAKCDSPTPPEVKLEPPTQNMPMGPGGMNPSGAPGPQPPHGHNMP
PEGMVSGGPTAPHMQNQMNGQMPGPNHMPMQGPGPGPNQPPNMPGSGAMNMPPSSHGSMG
GYNHAVPSSQGMPAQGQMNMTQGQGPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPG
GGGQHYQGQQNPMGMMGQVNPGNHVMGQRPMPPYRPPQQGPPQQYPGQEDYYGDQYSHAG
QGASEERDPAANQQSPYEKDHGNAQYGQQQEAYQQGPQQQGYPPQQQYPGQQGYPGQQQG
YGPSQGAPGQYPQGYPQGQGQQYGAYRGPQPGPPQAQQQRPYPGYDQGQYGNYQQ
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcgtttgcacctcacagacaacgtggaaagggtgatataacacccgctgga
attcaaaagttactggatgagaacaatcagctgattcaatgtataatggatttccagagc
aaaggaaagaccgcagaatgttcacagtaccaacaaatgctccacagaaatttggtttac
ctggccacgatagcagactccaatcagaacatgcagtctctgctccctgctaagtgtgac
tcccctactcctccagaggtaaagcttgaaccacccactcagaacatgcccatgggccct
ggtgggatgaacccgagtggagcgcctggcccccagcccccccacggacacaacatgccc
ccggagggcatggtcagcggcggccccactgccccacacatgcagaaccagatgaacgga
cagatgcctgggcccaatcacatgcccatgcagggccccgggcctggccccaaccagcct
cccaacatgcccggtagtggcgccatgaacatgccccccagcagtcacggttccatgggt
ggctataaccacgctgtgccctcgtctcagggcatgcctgcccagggccagatgaacatg
acccagggacagggacccatgggcaactacggcccccggcccaacatgaacatgcagcct
aaccaaggccccatgatgcaccagcagcctccctcccagcagtacaacatgccccctggg
ggtggcgggcagcactaccagggccagcagaatcccatgggcatgatgggtcaggtcaac
ccgggcaaccatgtcatggggcagaggcccatgcccccttacagacccccacagcaagga
ccccctcagcagtacccagggcaggaagactactatggggaccagtacagtcacgcagga
cagggagcttcagaagagcgagacccagcagccaaccaacagtccccctatgaaaaagat
catggaaacgcccagtatggccagcagcaggaggcctaccagcagggtcctcaacagcag
ggctaccccccacagcagcagtaccccggacagcagggctatcctggacagcaacagggt
tatggtccatcccagggagctccaggccagtaccctcagggttacccccagggccagggg
cagcagtacggggcctaccggggcccccagcccggcccacctcaggcccagcaacaacgc
ccatacccaggctacgaccagggtcaatatggaaattaccagcaatga
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