Oncorhynchus nerka (sockeye salmon): 115103056
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Entry
115103056 CDS
T07952
Symbol
trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115103056 (trpa1)
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115103056 (trpa1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
115103056
NCBI-ProteinID:
XP_029479513
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All DBs
Position
LG20:53027223..53041185
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AA seq
1103 aa
AA seq
DB search
MQDNTYQSVVYGDDATQISDKIFEWALQGDSAELEKHSAHLGVRDHANASPLHYATSHGH
ISTIQLIVQLTGPDELSASDEEGNTSLHWAVQRTQRESCACLLDLGANPNILNRRLMSPL
HMAVSLGHNTLIELLLSHSNTDANLEGDLGNTPVMLACCVDNHEALHLLFKYGARLCQQN
KLGHYPIHAAAFAGAKKSMQMVLQKGEEVGYSIESHINYVDKSFSTPLHLAVRGGNLEVI
KLCIEQGAKMDQQQCDKSTALHFACTQGATEAVKLMLSAHDRVCDVINLTDGTCQTPLHK
TTIFDHVELAEYLISKGGDINAIDCKGHTPLLLATSCSAWKTVSLLLTHGANLKIKDKHG
CNFLHLAILQPKGLTNLPPEFLKCSSVRELLDAEDNEGCTPMHYACRLGIPESVKNMLRL
NVSLDQKSKQKKSALHFAAEYGRINTCHRLLESMTNTRLLNEGDERGMTPLHLASRGGHV
IVVDLLLRKGALFHSDYKGWTCLHHAAAEGYSQTIIILLASNIKLLDKTDEDRNTALHLA
AREGHVAAVTLLLDRGAQITLNKSDASFLHEAVLNGRKDAAIAVIHNERCAEAMLLFEVK
STKRCVVMDMIEFLPESFKHLLDTCVKESDDDINSTNYSIEYTFRWLQAPMHVIKLAKAD
KSFDFQPLTALNYMVKFNRIELLTHPVCKKYLEMKWNAYGMKVHLLNLAIYSLGLGPLTH
IIHTLKPVLNTNVTNTTSPSSSVSMVTTSLDEQCYIITTCMFLILAMSLYAVGKELVQIV
QQGSKYFYDVTNALDWGAAISSLLFVIPLLMDLKDTWHWEAGVVAVLLSWINFLLYFQRF
ERVGIYVVMFLEIAKTLISIIVLFFFLLLAFALAFYALILDHKLFENRASIPLVIMQTFV
MMAGELNYQENVLKPFLGGILPFPYLTYCIFVMFTFAVPILLINLMIGLAVGDIAEVQAN
AELKQIGMQIELHTSLEEKMPYWLMKRVDQISLTEYPNRACDGKREMLFAMLGMAHERTT
LNLTSHPPTPMEQEISKQKYRLKEMSNIIEKQHNLLKLIVQKMEISSEAEEHDGPQLFQG
YRDKPLPCQSKWNPLLRALAARK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacaatacctatcagtctgtggtgtacggagatgatgctacacagatttctgac
aaaatatttgagtgggctctacaaggtgactcggcagagttggaaaagcactcagcccac
ctgggtgtccgtgaccatgccaatgccagccctctgcactatgccacctcacacgggcac
attagcaccatacagctcattgtgcagttgactggtccagatgaactgagtgccagtgat
gaggagggcaacacgtcattacactgggctgtgcagaggacccagagagagagctgtgct
tgccttctggacctgggagccaacccgaacatcctcaaccgccgcctcatgtctccccta
cacatggctgtcagcctcggacacaacactctcatcgagttattgctgtctcacagcaac
acggatgccaacctggagggagacctggggaacacacctgtaatgttggcctgctgtgtt
gataaccatgaagctctccatctactttttaaatatggagccagactatgtcaacagaac
aagctggggcattatcccattcacgcagcagcctttgcaggggccaagaaatcaatgcag
atggttcttcagaaaggtgaggaagtaggttactcaattgaatcgcacatcaactatgtg
gacaaatcattcagtactcctcttcatctggccgtccgtggaggcaacctggaggtgatc
aaactctgcatagaacagggagctaaaatggaccaacaacagtgtgacaaatccacagcc
ctccactttgcctgcacccagggagcaaccgaggccgtcaaactcatgctatcagcacat
gatagagtctgtgatgtcatcaatctcacagatggcacttgccaaactccactgcataag
acaacaatatttgaccatgttgaattggctgaatacctaatttcaaagggcggagacatt
aatgccattgactgtaagggtcataccccactgcttttggcaacaagttgtagcgcatgg
aaaacagtgagccttcttcttacacatggggctaatttgaaaataaaagacaaacatggc
tgcaatttccttcaccttgccatcttgcagcctaaaggtctgacaaaccttcctccagaa
ttcttaaagtgcagcagtgtgagagagctcctggatgcagaggacaatgagggttgtact
cccatgcactatgcctgcagactgggcattccagagtcagtgaagaacatgctcagactg
aacgtctcactggaccagaagtcaaagcagaagaaatctgcactgcatttcgcagccgag
tatgggaggataaacacctgccacagactcctggagagcatgaccaacaccagactgctg
aatgagggagatgagaggggaatgactcccctccacctggcgtcccgtggcggccatgtt
atagtggtggacctgctgctgcggaaaggagcgctgttccacagtgattataaaggttgg
acatgtctacatcatgctgcagcagagggatacagccagaccattatcatactcctggca
tcaaatatcaaactgctggacaaaacagatgaagacaggaacacagcgttacatctggct
gccagagagggccatgtggctgcagtgacactgctactggacagaggggcccagataacg
ctcaacaagagtgatgcctccttcctccacgaagctgttctcaacggcaggaaagacgca
gccatcgctgtcatccacaatgagagatgtgctgaggctatgctattgttcgaagtgaag
tcaactaagcgatgcgttgtcatggacatgatagagttcctgccagagtcattcaagcat
cttttggacacttgtgtaaaggagtcagatgatgacataaatagtaccaactactctatc
gagtacactttcagatggctacaagctcccatgcatgtcattaagcttgcaaaagcagac
aaaagctttgacttccagcctctcactgctctgaactacatggtgaaatttaaccgcata
gagcttttgacccatcctgtctgcaagaagtatctggaaatgaaatggaatgcctatggt
atgaaagtgcacctgctaaatctggccatctactcacttggtctggggcctctgacacac
atcattcatacactgaagcctgtcctcaacaccaatgtcaccaataccacgtcaccatca
tcatcagtcagcatggtgaccacatcccttgacgagcaatgctacataatcaccacatgc
atgttcctgattcttgccatgagtctgtacgcagttggcaaggagcttgtgcagatagtt
cagcagggttcaaagtacttctatgatgtgaccaatgcattggactggggtgctgccatc
agttctctgttgtttgtgatccctttactgatggacctgaaggacacatggcattgggag
gctggggtagtggcagttcttctatcctggataaactttctgctctatttccaacggttt
gaacgtgttgggatctacgtggtgatgtttttagagattgcaaaaactcttataagcatc
attgtactcttcttcttcctgctgctggcatttgccttggcgttctatgccctgattcta
gatcataaactttttgaaaatagagctagcataccgctagtaatcatgcaaacatttgtc
atgatggctggagaactcaactaccaagaaaatgtcctgaagccatttctgggagggatt
ctgccgttcccatatttgacctactgcatttttgttatgttcacatttgctgtgcccatt
ctcctcattaacctaatgattggtttggctgttggtgacatagcagaggtacaggcgaat
gctgagctgaagcaaattggaatgcagattgagcttcacactagtctggaagagaaaatg
ccatactggttaatgaagagggttgatcagatctcactcactgagtaccctaacagagcc
tgtgacggaaagagagaaatgttatttgcaatgctgggtatggcgcatgagagaaccact
ctcaacctcacctcccatccacctacacctatggaacaggaaatcagtaaacagaagtac
aggttgaaggaaatgtctaatattattgagaagcagcacaaccttctgaagctgatcgtt
cagaagatggagatcagttcagaggcagaagagcacgatggtcctcagctgttccagggc
tacagggacaagcccctcccctgtcagagcaaatggaaccctctgctgagggcactggca
gccaggaagtaa
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