Oncorhynchus nerka (sockeye salmon): 115103064
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Entry
115103064 CDS
T07952
Name
(RefSeq) DENN domain-containing protein 4B-like isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115103064
Membrane trafficking [BR:
one04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
115103064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
ARM_UBP24_USP9X-Y
SPA
DUF4616
Motif
Other DBs
NCBI-GeneID:
115103064
NCBI-ProteinID:
XP_029479535
LinkDB
All DBs
Position
LG3:complement(7541788..7578677)
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AA seq
1497 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLAPGGSAPLDEEGQQRGGRVVEPVIDLAVIARGLGEEVPEGFT
CIEKTQGGHPAGLSAGLINNPHMYLCYRRGHDKPPILDLGVLYEGKEVVKQGWNVIETTP
YSRSASLSSGGPATHRTFLTYRRAPESQALHTLGVTDISLLLPSKGEVAPHTFCRVEKNL
NTGIWGPALYLCYKRAVAKANALVYEAGLISRYPEADVESFPLPESVPMFCLPMGVTVES
WPLNTKYQLPVFSTFVLTSACGDKVYGAAIQFYEAFPRESLSERQSVRLGLVSVVDRRPI
TNRTLQVKKSVCVLSHWPFFTVFQKFLTFVYRYSISGPHVLPLEKHISSFMHNVPFPSPQ
RPRILVQLSPYDNLLLCQPVSSPLLLSGASFVKLLQNLGPENACVLLLAVLTEHKLLLHS
LRPDVLTSVSEALVSMTFPLRWHCPYIPLCPLRLADVLCAPMPFIVGVHSSYFDLYDPPT
DVVCVDLDTNTIFQAEDKKPLSWRSLPRKQGKMLVNTLTNLMKTLEKIYTTGQEEATLEF
LLTDYDLIYGRQKQLELEIQEAFLRFMSCLLRGYRAYLLPITQAPSDRTTDCSSLFNLQG
FLKSRERTHQKFYTQLTRTQMFTQFIEECSFVSDRHACLEFFDECVQKQSDVEKPEEVRL
IDLDEAHSGEHTVFIMPPEEPQEPDGSECPTHYSYETFPVLCMDLFDQPQDQLRVPTKGS
APSSPAPRRTKQEIKLAQKRAQIYSAVPDMWSKCLLGHCYGLWFIYLPTFVRAESAKVRA
LQTAYEVLKHMETRKVVLPDEVCYRILMQLCGQYGQPVLAVRVLLEMKKAGITPNTITYA
YYNKAVLESKWPSTNQGGRLRWAKLRNVLMAVAQFRQPIKQRLKSGSVRSRTDTMDSNQR
SRPQSNLIRQSSWSGLSESSSHESLTGSMVKSNSLNSMRGSTDKSKLSMKAVLGNPGANG
CSNPASRKPPVGPRDTTTPSPFPPGGVLVRRDQVCLSTFYKDCAETAVSDPDCSCQPEDR
DGRPPGPRDTVSRKAVDENYNNVSPPSRGSLAGKLQQLLTPTRHRVSGRRAASVDARRSG
GENGPVRRVSEQRLSRKAQVAESLLKAKERLYTATSESSLSVGSDVDLPETTNLAFPLRK
SWDTNQEGAGLEVLMSSCSLCRSCNSLVYDEEIMAGWTSDDSNLNSSCPFCSTTFVPLLN
AEICDLGPISSLERTNWNMDEEVESAAKSPGDQEAILGHNGVSEDSSSETSSYSESSSAT
MGSSVGGSPQVTVAYLSPLVLRKELESLLENEGEAVLSQGQLLDSHSIIFWNMVWYFHRL
GLPSNLLQLVRSSPLANQLAQTSENSAVRVRLLWDTLTPDTDYWPPLYILWRIHSGVPMR
NHSWRRHNHPFTLAFLEEVLRWVGMNEVHKGITLFLETIAKQPGTPKIQRSLYREMLFLT
LAAMGRDHVAAFDKKYKAAYQRLSGSLGREELRRKRAQPPSPKAVDCRRSFLLPLEC
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagaaatgcccccagctagtggactactttgtggtggcagggctggctccg
gggggctcggccccactggacgaagagggccagcagagagggggccgggtggtggagcca
gtcatagacctggcggtgatcgcccggggcttgggggaggaggtgcccgagggcttcacc
tgcatcgagaagacccaggggggccacccggccgggctgagcgccggactcatcaacaac
ccccacatgtacctgtgttaccgccgtgggcatgacaagccacccatcctcgaccttggg
gtgctgtacgagggcaaagaggtggtgaagcagggctggaatgtgatcgagaccaccccc
tacagccgctcagccagcctgagctccggggggcctgccacccaccgcaccttcctgacc
taccgccgggccccagagtcccaggccctccacaccctgggggtcacagacatctccctc
ctgctgcccagcaagggggaggtggccccccacaccttctgccgggtggagaagaacctc
aacactggcatatggggtccagccttatacctgtgctacaagagagctgtagccaaagcc
aacgccctagtctatgaagcaggtctgatcagtcggtatcctgaagcggacgtggagtcg
ttccccctgccagagtctgtgcctatgttctgtctgcccatgggtgtgacggtggagagc
tggcccctcaacaccaagtaccagctccctgtcttctctaccttcgtcctcaccagcgcc
tgtggcgacaaggtttatggtgctgccatccagttctacgaggcgttcccacgggagagc
ctctcggagcggcagagcgtccgtctgggcctggtgagcgtggtggaccggcggcctatc
accaaccgcaccctgcaagtgaagaagagtgtgtgtgttctctcccactggcccttcttc
accgtcttccagaagttcctcaccttcgtctaccgatactccatctccggaccccacgtg
ctgccacttgagaagcacatctccagcttcatgcacaacgtcccgttcccctcccctcag
cgacctcgcatcctagtgcagctctccccctatgacaaccttctcctctgtcagcctgtc
tcctcccccttactactcagtggtgccagctttgtgaagctgctgcagaacctgggccct
gagaacgcctgtgtcctgctgctggccgtgctgacggagcacaaactactgctacactcc
ctccgccccgacgtcctcacctccgtcagcgaggccctggtatctatgacgttccctctg
cgttggcactgtccgtacatccccctgtgcccgctgcggctggcagacgtactgtgtgcc
cccatgcccttcattgtgggcgtccactccagctactttgacctctatgacccccctact
gacgtggtgtgtgttgacctggacaccaacaccatctttcaagcagaggacaagaagccg
ttgtcatggcgatcactaccaaggaagcaaggcaagatgctggtgaataccctcaccaac
ttgatgaagacactggagaaaatctacaccactggccaagaggaggccaccctggagttc
ctgctgacggactatgacctgatctacgggcgtcagaagcagctggagctggagatccag
gaggccttcctgcgtttcatgagctgcctgctcaggggctaccgcgcctacctgctgccc
atcacccaggccccctcagacaggaccaccgactgcagctccctcttcaacctgcagggc
ttcctgaagtctcgtgaacgcacccaccagaagttctacacccagctgaccaggacccag
atgttcactcagttcatcgaggagtgctccttcgtcagtgatcgccacgcctgtctggag
ttcttcgacgagtgtgtccagaagcagtcggatgtggagaagcctgaggaggtgcgtctg
atagacctggacgaggcccacagtggggagcacacggtcttcatcatgcccccagaggaa
ccccaggagccagacggttcagagtgccccactcactacagctatgagacattccctgtg
ctctgcatggatctgtttgaccagcctcaggaccagctacgtgtccctaccaaggggagt
gcccccagcagccctgccccgcgacggactaaacaggagattaagctggcacagaagcgg
gcacagatatactcggcagtgcccgacatgtggtccaaatgcctgctgggccactgctat
gggctgtggttcatatacctgcccacctttgtgcgggcggagagtgccaaggtgcgtgcc
ttgcaaacggcatacgaggtgctcaagcacatggagaccaggaaggtggtactaccagat
gaggtgtgttacaggatcctgatgcagctgtgtggacagtacgggcagcctgtgctcgct
gttagggtacttctggagatgaagaaagctgggatcacacccaacaccatcacctatgca
tactacaacaaggcagtgctggagagcaagtggccctccaccaatcagggtggccgtctg
cgctgggccaagttgcgcaacgttctgatggccgtggcgcagttcagacagccaatcaaa
caacggctgaagagtggttcagtacgctcgcggacagatacaatggacagtaaccaacgg
tcccgcccacaatctaacctgattcgtcagtccagctggagcggcctgagtgaaagctcc
agccacgaatcgctgacggggtctatggtgaagagcaacagcctgaacagcatgagaggc
tcaacagacaagtctaagctctcaatgaaagcggtgctcgggaacccaggtgccaatggc
tgcagcaatcctgcctcccgtaagccccccgtggggccacgagacaccaccaccccttct
ccctttccccctggtggtgtcctggtgcgccgcgaccaggtgtgcctgtccaccttctac
aaagactgtgccgagacggccgtctctgaccccgactgcagctgccagcctgaggacaga
gacggcaggccacctgggccgagagacaccgtgagccgcaaggccgtggacgagaactac
aataatgtgtcaccgccgagtcggggaagcctggcagggaaactacagcagctgctcaca
cctactcgccatcgagtctcggggcggcgggccgcaagtgtagacgctcggcgctcgggg
ggtgaaaacgggccggtgcgcagggtgtcggaacagaggctgtcccgaaaagcccaggtg
gctgagagcctactgaaggctaaggagaggctctacactgctacctctgagagttctctg
tcggtggggagtgacgtcgaccttcctgaaaccaccaatttggcctttcctctccgcaag
tcctgggacaccaaccaagagggagcgggactagaggtgttgatgtcgagctgctccctg
tgtcggagctgtaactccctggtctatgatgaggagataatggccgggtggacgtctgac
gactccaacctcaactccagctgtcccttctgctcgaccaccttcgtcccccttctcaac
gctgagatttgtgacctaggacccatcagcagcctggaacgtaccaattggaacatggac
gaggaggtggaaagcgcagccaagtcccctggtgaccaggaggccatcctgggtcacaac
ggtgtgagtgaggactccagctctgagaccagcagttattctgagagcagcagcgctacc
atgggatcatcggtgggcgggtcgccccaggtgacggtggcctacctgagcccattggtg
ctgcgcaaggagcttgagagcctgctggagaacgagggtgaggcggtgctgtcgcagggc
cagctcctggacagccactccatcatcttctggaacatggtttggtacttccatcgcctg
ggcctgcccagcaatctgctacagctggttcgctcctcaccgctggccaaccaactagca
cagacttcagagaactccgcagtgagggtgaggctgctgtgggacacactgacccctgac
acagactactggccccccctctacatcctgtggaggatacacagtggcgtacccatgcgg
aaccacagctggcggaggcacaaccaccccttcaccctggccttcctggaggaagtgctg
cgctgggtcggcatgaacgaggtacacaagggaatcactctcttcctggaaaccattgcc
aagcaaccaggcacgcccaagatacaaaggagtctgtacagagagatgctcttcctcacg
ctggctgccatgggtagagatcacgttgctgcgtttgataagaaatacaaggctgcgtac
caacggctgagtggctccttgggccgcgaggagctccgcaggaagcgagcccagccacct
agccccaaggctgtggactgcagacggagcttccttctgcccctcgagtgctaa
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