Oncorhynchus nerka (sockeye salmon): 115103099
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Entry
115103099 CDS
T07952
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04115
p53 signaling pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115103099 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
115103099 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115103099 (cop1)
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115103099 (cop1)
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115103099 (cop1)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
115103099 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
WD40_like
zf-RING_10
UvrD-helicase
zf-rbx1
zf_C2H2_10
Sina_RING
Motif
Other DBs
NCBI-GeneID:
115103099
NCBI-ProteinID:
XP_029479587
EnsemblRapid:
ENSONEG00000027485
LinkDB
All DBs
Position
LG20:complement(55758278..55768112)
Genome browser
AA seq
712 aa
AA seq
DB search
MSSNRQQQTGGGTGPGTSSSSTGGTTNANGATSVGGNVSTNVNNSSNVVPSRTLATTGDG
LLVPAAAVQSPISLATLTRPSPSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSD
EKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMSDMDRNLDSTVPNFEAPSP
APSSLMDSTEYPSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMTRL
TDDSRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggaacggggcctgggacaagtagcagc
agtaccggtggcactaccaatgctaacggtgctaccagcgtaggcggtaacgtcagtacg
aatgtgaataattcttcaaatgttgtgccctcacggactctggctacaactggcgatggg
ttgctcgtacctgcagcggctgtccagtctccaataagcttagccacacttaccagaccc
agtccatcctcttctggcaccagcagaaaacgtcctctccaccaagcacctctctacaat
ggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatctgttttgaa
atgattgaggaagcacacatgacaaaatgtggacacagtttctgctacaagtgcattcgc
cagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgacaacgtggat
cagctctatccaaactttcttgtcaatgaactcattctcaaacaaaaacagagatcagat
gaaaaacggctgaagatggaccatccgaatgggtcaagatggcaagtgtttcaagacgtc
ctgggcacagaccaagagaacctagatcttgctaatgtcaacttaatgctggaactcctt
gtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcagatcttaatg
gaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttgcagaaggag
ctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactgtactcacca
atgagtgacatggatcgtaacttggacagcactgtgcccaatttcgaggctccctcacct
gcacctagtagtcttatggattcgacagagtatccgagtcaaccaccaggttttggtgga
acttcccagggtaagaggcaaacgtggtacaacagtactctggcttcacgtagaaagagg
ctcacagcgcactttgaagatctggaacaatgctacttctctaaccgaatgaccagatta
acagatgacagcaggaacctaaatcaactggatgatttcatggagtgtctctcaaagttc
acacggtacaactctgtgcggccgttggcgaccctgtcttatgctagtgatctctacaac
ggctccagtattgtctctagcattgaatttgaccgtgactgtgattactttgccatcgct
ggcgtcaccaagaaaatcaaggtgtttgagtatggaacagtgatccaggatgctgtggac
attcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatcagctggagc
agctaccacaagaatctgttggctagcagcgactacgagggaacagtcatcctgtgggat
ggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaagatgttggagtgtc
gatttcaacctcatggatcccaagcttctagcctctggttctgatgatgcgaaagtgaag
ttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagcaaatgtgtgc
tgtgtaaagttcagtcccacatcgaggtatcaccttgcttttggatgtgcggaccactgt
gtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaaggccacagg
aaagctgtatcctatgctaagtttgtcaacggagaggaaattgtatctgcctcaacagac
agccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattcaagggccat
attaatgagaagaactttgttggccttgcctccaatggggactatgttgcgtgtggaagt
gagaacaactcactttatctctactacaagggtctgtccaagacactgctgacattcaag
tttgacactgtgaagagtgtgttggataaagacaagaaagaggatgacaccaacgagttt
gtcagtgccgtatgctggagagctatgcctgacggggagtccaatgtgctgattgctgca
aacagtcaaggaacaatcaaggtacttgagcttgtttaa
DBGET
integrated database retrieval system