Oncorhynchus nerka (sockeye salmon): 115103121
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Entry
115103121 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM63-like isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115103121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115103121
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115103121
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
Sina_RING
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
115103121
NCBI-ProteinID:
XP_029479638
LinkDB
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Position
LG20:56853546..56859841
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AA seq
490 aa
AA seq
DB search
MNISLGYSHSTKQDSNMDSLEKQLICPICLEMFTKPVVILPCQHNLCRKCAQDIFQASNP
YLSTRGTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQEQESSSSKPEP
EPAKCDQPMCEEHEGEKINIYCVTCGVPTCSLCKVFGAHKDCDVAPLNTVFNKQKTELTD
CIAMLVGNNDRIQGIMSQLDETCKTVEENGRRQKSKVCESFDHLYAVLEERKGDMTLKIN
AEKQEKLDYINGLMRKYREHLENMAKIVETGIQTMEESEMATFLQTAKPLLQKLIAGTNI
SHLDKVERGYDNMDHYTANFERERRVLLTIDFVKDVEDDEEFEDGEEEVELRRMTGATHT
DVSPSAAGPSVVKANPPQPQQQTAPPPLPQRPIEILGVMATLANPQGPVRATTPVQFPSL
TPTPTATTQASPVHFPTTTPVQFPNTNLVNFPSAEPPTQMTSDAASSQQNTDDKDGPKHV
FSFSWLNNQK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatctctggggtattcacattccacaaagcaagacagcaacatggacagcttg
gagaaacagctcatttgccccatctgtttggagatgtttaccaaaccggtggtgattctc
ccttgtcaacacaacctttgtcgaaaatgtgcccaagatattttccaggcctcaaaccct
tatctatcgaccagaggaaccacggtatcttcagggggacgtttccgctgcccgtcctgc
agacatgaggtggtcctggacagacatggagtctatggcctgcagaggaacctgctggtg
gagaatatcattgacatgtacaaacaagaacaggagtcctcaagcagcaagcctgagcct
gagcctgccaagtgtgaccagcccatgtgtgaggagcatgagggtgagaagatcaacatc
tactgtgtgacatgtggcgtgcccacctgctctctctgcaaggtgttcggagcccacaaa
gactgtgatgtggccccactcaacactgtgttcaataagcaaaagactgagttgactgac
tgtatagccatgctagtggggaacaacgacaggattcaaggcatcatgagtcaactggat
gagacctgtaagacagttgaggagaatggcaggaggcagaaatccaaagtgtgtgaaagt
ttcgatcacctttatgccgtcctggaggagcggaaaggagacatgaccctgaagatcaac
gcagagaaacaggagaaactggactatataaacggccttatgaggaagtatagagagcac
ctggagaacatggcaaagattgtggagacagggatacagacaatggaggagtcagagatg
gctactttcctgcagactgcaaagcctcttctacaaaagctcattgcaggcactaacatc
tcccacctggacaaagtggagcgtggctatgacaacatggatcactacacagctaacttt
gagcgggagaggagggtactgctcactatagactttgtgaaagatgttgaagacgatgaa
gaatttgaagatggagaagaggaagtagaattgaggcggatgacaggggcgacccataca
gatgtctccccctctgctgcagggccctctgtcgttaaggccaaccctccacagccccag
cagcaaacagcacccccaccccttcctcagagacctattgagatcctaggtgtcatggct
accctggccaacccacagggccccgtccgtgccacaaccccagtacaattcccatcccta
accccaacaccaactgccaccacacaggccagcccagtccacttcccaaccacaacccct
gttcagttcccaaacacaaatctggttaacttcccatcagcggagccaccgacacagatg
acttctgatgcggcatcaagtcagcaaaacacagatgacaaagatggacccaaacacgtc
ttctccttttcttggctgaacaaccagaagtag
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