Oncorhynchus nerka (sockeye salmon): 115103213 Help Entry 115103213         CDS       T07952                                  Name (RefSeq) roquin-1-like   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism one  Oncorhynchus nerka (sockeye salmon) Brite KEGG Orthology (KO) [BR:one00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:one03000]     115103213    04121 Ubiquitin system [BR:one04121]     115103213 Transcription factors [BR:one03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     115103213 Ubiquitin system [BR:one04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     115103213 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf_CCCH_4 Prok-RING_4 FYVE NS3_helicase_C Baculo_IE-1 zf-RING_6 RING_XB3-XBAT31 Motif Other DBs NCBI-GeneID:  115103213 NCBI-ProteinID:  XP_029479859 LinkDB All DBs Position LG20:complement(62583981..62612239) Genome browser AA seq 1110 aa AA seqDB search MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNNRGVG LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGLALSRKVLVLFVVQRLEPRFPQASKT SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNQLRPHLELL ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR DMKQKGGCPRGASCTFAHSQDELEKYRKMNKRLAARLPGSSSLLSDDCLPLDMGVTRKTS PLTNGSAVHPMPQLITRGTDAVTYDLLCKPKMDGGSSSSPGSPPDSLDSGPTQGFLHPPL AMSHPRGSGDPMPKQMPVGVMPRGPQMYPQQLPDMYYSDSRPLPSASQYEPSQYPQGYPY QQSPQYSSQRYIRNLPTPSEPVGPPYQDPYPGYGPPERPYPAPHSGTPYSYLPHYDTRGR HGPYPGPQPYPSQRDDMVRMSPAPLDMPPNHHYQQEQAARERYPPEGYYPTGAQPQSMRS NVREQYRRSSQPSLDYLHHRRKELMAQLEERKVISPPPFAASPTLPHAFPSDYPPEYGEE SSKAFGKCREPDYAGQYSPWSCDTIGSYIVTKDAKPKDIMTPGAMEMMNVDGKGLRGEPS MEAQARQGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASAQGPKHMAA EFSYGHHGGWGGASYPSHQTGSSSQGHFSEKLYMPAQDREHLKIELQQVNQQITQQTQTH GMEREVSALAAQPSQPCQNQGQQGKWPGPVGVSSNAALVSSEQLSMELHKVEREIGKRTR RMDMDSQVAHEVQYKMKAAQNGQQDHKTQLEEIALALGEVSNGSSGLGQDGGVGGAMLSL TNKASSLSLCSEPGPGVSELQKNGMVHSCS NT seq 3333 nt NT seq  +upstreamnt  +downstreamnt atgcctgtgcaagccccacaatggacggagttcctgctgtgtcccatctgcacgcagacg ttcgaggagacggtgcggcggcccatctcgctgggctgtggccacaccgtctgcaagatg tgcctgaacaagctccaccgcaaggcctgccccttcgaccagacagccatcgccaccgac atcgagcagctgccggtaaacacagccctactgcagcttgtggggggacaggttcccaag gttcagccggtggccctgatcaccagcccagaggactcgcagcactatgaggaggctagg cagtgtgtagaggagctggccctctacctcaaacccctcagcaacaacagaggggtgggt ctaagcagcacagcccagagcatgctgagtcggcccatgcagaggaagctggtgaccctg gtccactgtcagctggtggaggaggagggccgtgtgcgggccatgagggcagccaggtct ctgggggagcgcacggtcacagagctcatcctacaacaccagaatccccagcaattgtca tccaatttgtgggccgccgtccgggcccggggatgccagttcttgggcccagccatgcag gaggaggctctgaagctggtgctgctggctctggaggatggcttggccctgtccaggaag gttctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaagacc agcataggccacgtggtgcagctcctctacagggcttcctgcttcaaggtgaccaagcgc gacgaggactcgtccctgatgcagctgaaagaggagttcaggacgtatgaggcactgcgg cgcgaacacgactcccagattgtgcagatcgccatggagggtggcctccgcatcgctccc gaccagtggtcctccctgctctatggggaccagtcccacaagtcccacatgcagtccatc atcgacaagttgcaaacgccagcgtcgtttgcccagagcgttcaggagctgaccatcgcc ttgcagaggacgggcgaccccgccaaccttaatcaactccgaccacatctggaactactg gccaacatcgaccctagccccgacgccccccctcccacgtgggagcagctggagaagggt ctggtggcggtgaagacggtggtccatggcctggtggacttcatccagaaccacagcaag aagggagccgacccacaacagcctccccagcacagtaaatacaagacgtacatgtgtcgg gacatgaagcagaaggggggctgtccccgaggagccagctgtaccttcgcccactctcag gacgagctggagaagtaccgtaagatgaacaagcgtttggcggctcgcctccctggctca tccagcctgctgtcggatgactgtctccctctggacatgggggtgacccggaaaacctcg ccccttaccaacggctcagctgtacaccccatgccccagctcatcacccgcggcacggac gccgtgacctatgacctgttgtgcaagcccaagatggacggcgggagcagcagctccccg ggatcgccccctgactctctggattcagggcccacacaagggttccttcaccctcccctt gccatgagtcatcctagggggtcaggcgaccccatgcccaaacagatgcccgtaggtgtg atgccccgggggcctcagatgtacccccagcagctgcctgacatgtactactccgactca cgcccactgccctccgcctcccagtacgagccttcgcagtacccccaaggatacccctac cagcagtccccccagtactcctcccagcgctacatccgaaacctccctacccccagcgag cccgttggacccccctaccaggacccctatcccggctatggccctcccgagcgcccttac ccagctccccactccggcaccccctactcctaccttccccactatgacacccggggccgc cacggcccttaccctggcccccagccatacccctcgcagagggacgacatggtccggatg agccctgctcccctggacatgccccctaaccaccactaccaacaggagcaggcggccagg gagaggtaccccccagaggggtactacccaactggggcccagcctcaatccatgaggtcc aatgtccgggagcagtacagacgctcctcccagcccagcctggactacctgcaccatcgc cgcaaggagctgatggcccaactagaagagcggaaggtcatctccccaccacccttcgct gcctcccccacccttccccatgcctttcctagtgactaccccccagagtatggggaggaa agctccaaagcctttgggaagtgcagggagccggactacgccggccagtattctccctgg tcctgtgacactatcggctcctatattgtcaccaaggacgccaagcccaaagacatcatg acgcccggcgccatggagatgatgaatgtggatggtaaaggtctacggggggagccctcc atggaggcccaggccaggcagggggcggaggtcaaagacgacgaccccatcatccccttc ggcccccagcccaccgtgtcgcgcttcggggccatctcacgcacctccaagacaggctac cagacgacaggccccgtgcaggccatggcctccgcccagggacccaagcacatggccgcg gagttctcctatgggcaccacggaggctggggcggcgcctcctacccctcccaccagact ggctcctcctctcagggacacttcagtgaaaagctgtatatgccagctcaggacagagag catctgaagattgagctccaacaggtcaaccagcagatcacccaacagacccagacccac ggcatggagagggaggtcagtgccctggcggcccagccctcccaaccatgtcagaaccag ggccagcaggggaagtggcccggtccagtgggggtttccagcaatgctgccttggtgtct agcgagcagctcagtatggagctgcacaaggttgagagggagattggcaagaggacccgc cggatggacatggacagtcaggtggctcatgaagtccagtacaagatgaaggctgcacag aatggccagcaggaccacaagacccagctggaggagattgctctggccctcggtgaggta tctaatggctccagcggtctaggtcaggacggtggtgtgggcggagccatgttgtcactg accaataaagcatcttcgctcagcctgtgttctgagccagggcccggggtctcagagctg cagaagaatggtatggtccattcctgctcctag

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