Oncorhynchus nerka (sockeye salmon): 115103230
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Entry
115103230 CDS
T07952
Name
(RefSeq) coatomer subunit beta'-like isoform X1
KO
K17302
coatomer subunit beta'
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115103230
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115103230
Membrane trafficking [BR:
one04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
115103230
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
115103230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
115103230
NCBI-ProteinID:
XP_029479892
LinkDB
All DBs
Position
LG20:complement(62879858..62897783)
Genome browser
AA seq
944 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTSGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRVEIQPKHIFWSDSGELVCIA
TEDSFFILRYLSEKVAASQENNEGVTEDGIEDAFEVQGEIQEVVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSSDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNAAMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDHCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLAKV
NQKAAESLADPTEYENLFPGLKESFVAEQFLRETCLGNSLPATNYPLITPNEERNILEEA
TGYEPKGAPLSLATPVLQAEDSGEETMLAAGVMASVLAAVVAPVAAAVIPSEAEPEVAPE
EESPSSSESQKDKVLDELEDDLDNMELDDIDTSDVNLDEDFLDD
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggctggacatcaagcggaagctgacagcccggtcagaccgtgtgaagagc
gtggacctccacccgaccgagccgtggatgctggccagcctgtacaatggtagtgtctgt
gtctggaaccacgaaacacagaccttggtgaagaccttcgaagtgtgtgaccttccagtg
agagcatcgaagtttgtagccaggaagaactgggtcataaccggagcggatgacatgcag
atccgtgtgttcaactacaacaccctggagagggtccacatgtttgaggcccactctgac
tacatccgctgtatcgccgtgcatcccacccagccctacatcctcacaagcagtgacgac
atgctaatcaagctgtgggactgggagaagaagtggtcttgcagtcaggtgtttgagggc
cacacccactacgtcatgcagatcgtcatcaaccctaaagacaacaaccagtttgccagc
gcttctctggacagaaccatcaaggtgtggcagctgggctcctcctctcctaacttcacc
cttgagggccatgagaaaggagtcaactgcattgactactacagcggaggggacaagcca
tacctcatatcaggtgctgatgaccgtctggtcaagatttgggactaccagaacaagacg
tgtgtgcagaccctggagggccacgcccagaatgtgtcgtgtgtcagctttcacccagag
ctgcctatcatcatcacaggctcagaggacggcactgtgcgtatctggcactcgagtaca
taccgtctggagagcacgctgaactacggcatggagcgcgtgtggtgtgtgtgtggcctg
agaggctccaacaacgtggcgctgggctacgacgagggcagcatcatcatcaagctgggg
cgtgaggagccagccatgtccatggacaccagtgggaagatcatctgggccaagcactcg
gaggtgcagcaggccaacctgaaggccatgggcgacacggagatcaaggatggagagagg
ctgccgctggccgtcaaagacatgggcagctgtgagatctacccccagaccatccagcac
aaccccaacggaaggtttgttgtggtgtgtggagacggagagtacatcatctacactgct
atggccctgaggaacaagagcttcggctcagcgcaggagtttgtctgggcacacgactcc
tccgagtatgccatcagggaaagcaacagtgtggtcaaaatcttcaagaacttcaaggag
aagaagtctttcaagccagactttggtgctgaaggtatctatggaggctttttgctaggc
gtcaggtcagtgaacggtctggccttctatgactgggaaaacacagagctgatccgccgc
gtcgagatccagcccaaacatatcttctggtcagactcaggggagttggtgtgtatagcc
acagaggattccttcttcatcctgcgctacctgtcagagaaagtagccgcctcccaagag
aacaacgagggagtgaccgaggatggcatcgaagacgcctttgaggtccaaggggagatc
caggaggtggtgaagacgggcctatgggtgggagactgcttcatctacaccagctctgtc
aacagactcaactactttgtggggggagagattgtcaccatcgctcacctggacagaacc
atgtacctcctgggctacatccccaaggacgaccgcctgtacctgggtgacaaggagctg
aacatcgtcagctactccctactggtgtctgtgctggagtaccagacagctgtgatgcgc
cgggactttggcatggccgacaaagtgctgcccaccatccccaaggagcagaggacccgc
gtagcacacttcctggagaaacagggcttcaagcagcaggctctggccgtgtcatcagac
tcggagcacaggtttgagcttgccctgcagctgggggagctgaagatcgcctatcagctg
gctgtggaggcagagtcggagcagaagtggaagcagctggcagagctggccatcagtaag
tgccagtttagcctggcccaggagtgccttcatcacgcccaggactacggtggcctgctg
ctgctggccaccgcctcgggcaacgccgccatggtgggcaagctggccgagggcgccgag
cgggacggcaagaacaacgtggcattcatgacctacttcctgcaggggaaactggaccac
tgtctagagctgctgatccggaccaaccgactgcccgaggcggccttcctggcccgcacc
tacctacccagccaggtgtccagagtggtcaagctgtggagggagagcctggccaaggtc
aaccagaaggcggctgagtcactggccgaccccactgagtatgagaacctgttccccggg
ctgaaggagtcgttcgtggccgagcagttcctccgtgagacctgcctgggcaactccctg
cccgccaccaactaccctctcatcacgcccaatgaagaacgtaatatactagaggaggcc
acgggctacgagcccaaaggagctccactctccctcgctacaccggtactgcaggctgaa
gacagcggcgaggagaccatgctggccgcaggcgtgatggcgtccgtgttggcggcggta
gtggcccccgtggctgcagccgtgatcccctcggaggcagagcctgaggttgcacctgag
gaggaaagccccagctcatctgagtcacagaaggacaaggtcctggacgaacttgaagac
gacctggacaacatggagctggacgacattgatacctcggacgtcaacctggacgaggac
ttcctggatgactga
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