Oncorhynchus nerka (sockeye salmon): 115103240
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Entry
115103240 CDS
T07952
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115103240
03015 mRNA surveillance pathway
115103240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115103240
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115103240
5.6.2.5 RNA 5'-3' helicase
115103240
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115103240
mRNA cycle factors
Common to processing body (P body) and stress granule
115103240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
AAA_16
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
115103240
NCBI-ProteinID:
XP_029479909
LinkDB
All DBs
Position
LG20:complement(63552721..63563418)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLENQVNGP
DGVQQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLSPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSTGRSSNMYFQTHDQIGMIGPGPMASMNIPF
NLVMPPMPPPGYLGQVHCPPAGRGGGMKGKAGGGGVRGGRQRSRGMGNHGGGSGLMSGSQ
ASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDS
TYQGERAYQHGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacactgaggaa
gcggagttgcttggagcagatacccagggttctgagtatgagttcacggattttaccctg
ccgagccagactcaaacaggccaaacgcagagtcagttggaaaatcaggtgaatgggcct
gatggagtacagcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagacgaggaagacagctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatcctgcttgtgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacatctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggatggtcctttgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctctgagcaggagcagctgcgggcccgccagatcaccgcccagcagata
aacaagcttgaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggctgactacgataagaaactcaaagag
tcccagacccaagacaatattactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggagatgag
atttgcctgaggtacaagggagacctttccccactctggaagggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccatcgagctgaggagcagtgctggggcc
cccgtggaagtaccacacaacttccaggttgactttgtgtggaagtccacctcctttgac
cggatgcaaagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtatatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcactgggaaaactgtcacc
tctgccactgtagtgtaccacctggccagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacattgcggtggaccagctgactgagaagatccacatgtcaggtctgaaggtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctcagacgagaagcgctacagggccctgaagcgcacc
gccgagagggaactacttatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggctgccaaggcgggcctgtcc
cagtccctgtttgagcgtctcgtggtgctgggcattaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgctttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccacaa
ccagacaagcccatgttcttctacgtgaccctgggccaggaagaaattgcaagctctgga
acctcctatcttaacagaactgaggcttccaacgtggagaagatcaccaccaggctgcta
aaggctggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgccgtctcaacgtg
gctctcaccagagccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactataaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaaactggtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgcaagggaggctctt
attcctggatctgtgtatgaccgcagcagcactggacgttcatccaacatgtacttccag
acccacgaccagatcggcatgattggtccgggccccatggcctccatgaacattcccttc
aacctggtcatgccccccatgccgccgccaggctacctgggccaggtccactgcccgcca
gcaggccgtggtggaggtatgaagggtaaggcgggcggcggaggggtgcgaggtgggcgc
cagcggagccgtggcatggggaaccacggcgggggcagcgggctcatgagtggcagccag
gccagccaggacctgggctcccagcccttctcccagggacccctcacacagggctacatc
accatgagccagccttcccagatgagccagcctggcctctcccagcctgaactctctcag
gacagctaccttggcgatgagttcaagtcccagattgacgtggccctctcccaagactcc
acctaccaaggggaaagagcttatcaacatggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
