Oncorhynchus nerka (sockeye salmon): 115103269
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Entry
115103269 CDS
T07952
Symbol
pif1
Name
(RefSeq) ATP-dependent DNA helicase PIF1 isoform X1
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
one03032
]
115103269 (pif1)
03029 Mitochondrial biogenesis [BR:
one03029
]
115103269 (pif1)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115103269 (pif1)
DNA replication proteins [BR:
one03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
115103269 (pif1)
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
115103269 (pif1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
PH_LRR1
Pif1_2B_dom
AAA_30
AAA_19
UvrD_C_2
AAA_22
DEAD
Herpes_Helicase
Mg_chelatase
RsgA_GTPase
ABC_tran
AAA_7
PhoH
AAA_16
AAA_5
Motif
Other DBs
NCBI-GeneID:
115103269
NCBI-ProteinID:
XP_029479966
LinkDB
All DBs
Position
LG20:64546352..64557206
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AA seq
647 aa
AA seq
DB search
MSPHIVTMMQGDDGAQLQCSVVVERLNSSGQATKRQVIRKAAVLLGRNEFQEIILRVHNG
KVPESYTLKEFQLFTRFAKDGKCTVKLLPENVQVLISDCPPHLLNIFLKTLSIKHQAWQT
SKPMTDREKLKACLPRSFETISPLQQKDVQKANELRSKVNAPVLSKGLVVRTANKMTGGP
QGQQIKRQRTDCDSSPLKALHPSKKPTLSLPAARKLNKEQAAVLSAVLSGKNVFFTGSAG
TGKSFLLKRIVGSLPPKSTYATASTGVAACHIGGTTLHNFAGIGSGSAPLEQCIELAQRP
GVLQHWTSCRHLIIDEISMVEAQFFDKLEAIARCLRRSTEPFGGIHLIVCGDFLQLPPVS
KEKDKAAFCFQSRSWRKCIHLNMELTEVRRQTDQSFISLLQAVRVGRVTEEVTAKLIKSA
YHKIERDGILATRLCTHKDDVELTNDNKLQQLPGSVRVFEAVDSDPALVKTIDSQSPVSR
LLQLKVGAQVMLTKNLDVQRGLVNGARGVVVDFQPGKLGLPRVRFLCGTTEALKPERWMF
KAGGGLYLSRQQLPLKLAWAISIHKSQGMTLDCVEISLARVFERGQAYVALSRAKSLEGL
RVMDFDPHVVRADPDVLHFYSKLRKERLLLQASMNEFVGKSNKANRW
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgcacattgttacaatgatgcaaggggacgacggtgcccagctccagtgcagt
gtcgtggtggagcgcctgaactcctctggccaggccaccaaacgccaagtcatccggaag
gcagctgttcttctcggtcgcaacgagttccaggagataatcctgcgcgtgcacaacggg
aaagtgcccgaaagttacacgctcaaagagttccagctttttacccggtttgctaaggat
ggcaagtgcaccgttaaactgctccccgaaaacgtccaagtgctcatctctgactgccca
ccccacctactaaacattttcctgaagaccttgagtatcaaacaccaggcctggcagact
agcaaacctatgacagaccgagagaagctgaaagcctgtctgccccgcagcttcgagacc
atcagcccgttacagcagaaggatgtacagaaggccaatgagctgaggagcaaagttaat
gcaccagtgctctctaaaggtctggtagtgaggactgctaataagatgactggaggacca
cagggacagcagattaagagacaaaggacggactgtgactctagcccattgaaggcactc
cacccaagcaaaaagcccaccctgtctctaccggcggcacggaagttgaacaaagaacaa
gccgctgtcctcagtgctgtgttgagtgggaagaatgttttcttcactggcagtgcaggc
acagggaagtccttcctgttgaagaggattgtgggctctctgccgcccaagagcacctac
gccacggccagcacgggcgtggcagcgtgtcacatcggggggaccacgctacacaacttt
gctggtatcgggtcaggctcagcccctctggagcagtgtatagagctggcccagaggccc
ggggtcctgcagcactggactagctgtcgccacctcatcatcgatgagatctccatggtt
gaggcccagtttttcgacaagctggaggcaatagcaaggtgtctgaggaggtccacagag
ccgtttggaggaatccatctgatagtgtgtggggacttcctccagctgcccccggtctcc
aaggaaaaggacaaggccgcgttctgcttccagtctagaagctggcggaagtgcatccat
ctgaacatggagctgactgaggtgcgcagacagactgaccagtctttcatctccctcttg
caggcagtgagggtgggcagagtcacagaggaagtcactgccaagttgataaagagcgcc
tatcacaagatcgagcgggatggtatcctggcaaccaggctttgcactcacaaggacgat
gtagagctcactaacgacaacaagctccagcagctgccagggtcagtgcgggtgtttgag
gctgtggacagcgaccctgcactggtgaagaccatagacagccagagtcccgtcagcagg
ctgctgcagcttaaagtgggcgctcaggtcatgctaacaaagaacctggatgtccagcgt
ggcctggtcaacggggctcgaggtgtcgtggtggactttcagccggggaaactagggctc
ccacgcgtgcgtttcctgtgcggcaccactgaggcgttgaagccagagcgttggatgttc
aaggccggaggcgggctttatctgagccgccagcagctgccactcaaactggcctgggca
atctctatccacaagagccagggcatgacgctggactgtgtggagatctccctggcgcgt
gtgtttgagaggggccaggcctatgtggcgctgtctcgggccaagagcctggaggggcta
agggtcatggactttgacccccacgtggtccgtgctgaccccgacgtgctgcacttctac
agcaagctgaggaaagagaggctactgttgcaggcttcaatgaatgagtttgtgggcaaa
agtaacaaggcgaatcgttggtga
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