Oncorhynchus nerka (sockeye salmon): 115103353
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Entry
115103353 CDS
T07952
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04382
Cornified envelope formation
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04518
Integrin signaling
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115103353
04518 Integrin signaling
115103353
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115103353
09142 Cell motility
04820 Cytoskeleton in muscle cells
115103353
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115103353
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115103353
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115103353
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115103353
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115103353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115103353
NCBI-ProteinID:
XP_029480100
LinkDB
All DBs
Position
LG20:complement(67540626..67614487)
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AA seq
1658 aa
AA seq
DB search
MRTALLCFALGVMLRGIEAKDCACTGKSMCHCEGVKGNKGERGFAGETGPPGSVGHPGSE
GHLGPVGPKGDVGPHGPPGTDGDRGPEGKEGFSATPGLPGIPGLQGPMGQPGSSGCNGTE
GERGATGPAGPSDGDYGLRGLPGAPGPKGESQMLIGFGQSGRPGPRGRDGDQGVHGVTGP
TGQQGDVGHRGVVGLLGLPGIPGFKGQEGRSSSIPGSGGPKGHQGPPGFPGPKGIKLYAH
APSDLKGETGDLGEKGCKGSPGYAGQVNFKEKGDQGGIGTEGRPGKDGRQGPAGYEGRKG
NPGLAGPDGIPGPRGQKGVQGQDGDPGEVTMIGCDVIGPKGQPGFTGPPGPPGVTGPPGA
TGFEGPPGTPGPNNGGDPYNRGAKGHSGPKGDEGDPGPIIQGEPGREGSQGTTGDLGPPG
PPGESDHLKGVIGPPGAKGAKGEQGYGGQYGSKGEKGEVCSLCTGKGSGGEPGPPGSPGQ
PGVPGFSAGPGPKGEPGFKGPSGSPGQQGLHGLSGVPGPPGPKGNSGSCNHQGIKGEKGA
PGPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYDGPLGLNGDTGDPGPPGPQGYPGPDGSP
GPVGIGPLGPSGPKGNSGVPGLPGTPGYRGQKGEPCSSVADQGVPGLPGKAGLPGTRGPP
GPRGGAGNPGEKGDSGVFSTLGRRGPAGQKGDKGQPGRPSTSGSGYPGRPGVMGLPGAQG
PKGDAGFETLGPAGPKGFPGGVGAQGPPGDPGVLGRPGSPGPPGINGSSGPKGSKGVDGS
QGPPGYAGTCCTEAPTGPPGLSGRPGLPGINGEMGLCGDPGTPGFGSSGPAGDPGPPGTS
GPVVQGLTGQMGGRGRDGLPGASGPRGDPGLEGRSGPGPDGPPGPEGPPGPKGSVGPDGE
KGHSGVPGSVGDDGRPGPCGPSSDTVIHGPPGDPGIHGLPGFHGAKGHPGYPGPKGIDGR
DGDPGNGPRGCPGDPGADGLCSGEPGPSGLRGNMGLMGLPGPHGTQGGLGSNGDAGLDGR
PGPRGPKGTKGESSCAKPGLPGSPGQKGEPALNNKHDSKGMKGSPGYAGPPGSQGPSGAK
GDPGHHGAQGPAGQPGTDGPPGPPGLPASHGAPGQPGLPGPPGPYGPKGNQGHDGIPGPA
GQKGETLIVRSTPGPRGKNGLPGPKGDVGFPGPTPPGPPGCPGDQGHRGNEGPQGSRGRP
GFGGVCVNGLKGDAGSHGNPGSPGQQGPQGQPGSGGYECKGDRGDLGAPGGRGLDGLTGD
LGPPGLPGPGSIPGPPGPIGSPGHSGTPGVPGEMGDPSFNPGPKGPNGSRGPPGPPGCPG
LDVPVRPEKGDPGPPGYTGNQGPPGHSGLPGQPGLTGLPGPEGQQGHSPPGLPGFPGWKG
DKGSPGLTGPLGYRGFPGQKGPLGPRGSSTAGLADSFLLARHSQTIRVPDCPQGTTLIYS
GYSLLFINGNKRAHGQDLGSIGSCLPRFSTMPFLFCDTDNTCRYAARNDYSYWLSTEKPM
PRSMDLISGDEISSYISRCSVCEGSSNAMAIHSQTAQLPDCPGDWESLWTGYSFVMQTGA
GAEGSGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLDPNHMFSKPVPQT
VKGPLLENVISRCRVCRKPQSNDKSSQAQAITQNIWNI
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgcgttgctttgttttgctttgggggtgatgctgcgaggaattgaggcgaag
gattgtgcgtgtactgggaagtccatgtgtcactgtgaaggagtcaaaggcaacaaggga
gaaaggggttttgcaggagagacgggtccacctgggtcggttgggcatccaggctcagag
ggtcaccttggacctgtggggccaaagggagatgtgggccctcatggacctccaggaaca
gatggcgatcggggacctgaaggtaaagaaggattttctgcgacaccaggtctaccgggc
atcccaggccttcaaggaccaatgggccaaccaggttcctcaggatgcaatgggacagag
ggtgagagaggtgctactggtccagctggtccctctgatggtgattatggattaagaggt
ttacctggagcacctggaccaaagggtgaatcccaaatgttaattgggtttggacagtca
gggagacctggaccccgaggaagggacggtgaccagggtgtccacggggtaacaggaccg
acaggacaacaaggggacgttgggcaccgtggtgtcgttggattgctaggtctacccggg
atcccagggtttaagggtcaagagggacgcagctccagtatccctggctctggtggtcca
aagggacaccaagggccccctggattcccgggacccaaagggatcaaactatatgcccac
gctccctccgatttgaagggggagacaggggatctgggtgagaagggctgtaagggttca
cctggttatgctggccaggtcaactttaaggaaaaaggggaccaggggggcattggcact
gagggaagaccagggaaagatgggcgtcaagggcccgctggatatgaggggagaaagggg
aatcccggtttagcaggacctgatggaatacctggaccgcggggacaaaagggtgtccag
ggtcaagacggagaccctggggaggtgaccatgattggctgtgacgtaattggccccaaa
ggacaaccaggatttactggccccccggggccccctggggttactggtcccccaggtgcc
actggattcgaggggcctcctggtactccaggtcctaacaacggaggagatccctacaat
cggggagcgaagggccacagtgggcctaaaggggatgaaggagacccaggacccatcatt
cagggagagccaggcagggaaggctcacaaggaacaactggagaccttggacccccggga
ccacctggagaatcagatcatctgaagggtgttatcggacctccgggggcaaagggagcc
aagggagaacaagggtatggtggccaatatggatcgaaaggtgagaaaggggaggtctgt
agtttgtgtacgggaaaaggatctggaggagagccaggacccccaggttcccctggtcag
cctggagtcccaggctttagtgcaggaccaggacccaaaggagagccaggattcaaagga
ccctcgggatcacctggacaacagggtctccatggcctttcaggtgttccaggacctcca
gggccaaaaggaaattcaggttcctgcaatcaccaggggataaagggagagaaaggagcc
ccaggaccagctggtagatcagggctggacggcctatacggggcccctggctttcgtgga
cgcaagggccaacaaggccctaagggtgatccatacgatgggccactgggtctgaacgga
gatactggtgacccaggccctcccgggccacagggatacccaggaccagacggttcacca
ggtccagtaggcatagggccgcttggcccctcaggacctaaaggcaatagtggggtacca
ggtctacctggtacacctggttaccgaggtcagaagggcgagccctgcagcagtgtggct
gaccagggagtcccaggcctaccgggaaaggcggggctgccgggcacacggggcccccca
ggtcctcgtggtggtgctggtaacccgggggagaaaggggacagtggtgtattctccacc
ttgggaagacgaggacccgctggacagaaaggtgacaaagggcagccgggacgcccaagt
acctctggaagtggctatcctggacgacccggcgtaatgggactccctggggctcaaggg
ccaaagggtgatgctgggtttgagaccctaggtccagccggccctaaaggtttcccaggt
ggtgttggggcccagggccctcctggagatccaggagtactgggccgaccagggagtccg
ggaccacccggcatcaatgggtcttcaggccccaaaggaagtaaaggtgtagatggttcc
caaggacctcctggttacgcaggtacttgctgtactgaagccccaaccggaccaccaggg
ctgtcaggcagacctggactcccaggtattaatggagagatgggtttgtgcggggaccct
ggcaccccggggtttggaagctcaggtccggctggtgaccctggtccccctgggacctcc
ggacccgtagtgcaaggcctgactggacagatgggaggcagagggagagacgggttacca
ggtgcatcaggtcctagaggtgaccctgggctggaaggaagatctggaccgggccctgac
ggcccacctggacctgaaggaccacccggtcccaaagggtcggttggccctgatggggag
aaaggtcacagtggtgtaccaggctctgtgggggacgacgggcgcccaggcccttgtgga
ccatcatccgatacagtcatacatgggcccccaggggaccctgggatacatggtctgcct
ggtttccatggtgctaaaggacaccctggatatcctggacccaaaggcattgatgggagg
gacggtgacccaggaaatgggccgagaggctgtccaggtgatcctggggctgatggactg
tgctcaggagaaccaggcccatctggactcagaggaaatatggggctcatgggtctacca
ggtccccatggaacacagggagggctgggttccaatggagacgcaggactagacggtagg
cccggtccacgcgggccaaaaggaactaaaggagagtccagttgtgcaaaaccaggcctc
ccaggatcacctggacagaagggcgagccagccttgaataacaaacatgactccaaagga
atgaaaggctctcctggttacgcaggtcctccaggctcccaaggaccttctggagccaaa
ggagacccaggacaccatggagcccaaggtcctgctggccaaccaggtactgatggtccc
ccaggccccccaggactccctgcatcacatggagctccaggacaaccagggttacctggc
cctcctggtccctatggtcctaaaggtaaccagggtcacgatggcattcctggacctgct
ggtcagaagggagagacactgattgtgagatcaactcctggcccacgtggaaagaatgga
ctgccaggtccaaagggagatgtgggattccctggccccacccctccggggcccccagga
tgtccaggagatcagggccaccgaggcaacgaaggaccccagggttctcgcgggaggcca
gggttcggtggtgtttgtgtcaacgggctgaaaggagatgctggttcccatggcaaccct
ggaagccctggacagcagggtccacagggacagccagggtctggaggctatgaatgtaaa
ggggacaggggagacctgggcgctccagggggcaggggcttggacgggcttacgggggac
ctcggacctccagggctaccgggaccaggatccatccctggacctccaggaccaatcggt
tccccaggtcactctggaaccccaggagtccccggtgagatgggtgatcctagttttaac
cccggcccgaaaggaccaaatggatccagaggcccgccaggaccaccaggttgtccgggg
cttgatgtgccagtgagacccgaaaagggggatccgggcccacccggttacaccggtaac
cagggacctccaggtcacagtgggctgccaggacaaccaggattaacaggcctcccaggc
cctgagggtcaacagggacacagccctccaggcctgcctggcttccccggatggaaggga
gacaaaggatcgccaggactgacagggccgttgggctaccgggggtttccgggtcagaag
ggtcctcttggcccacggggcagcagcacggcaggcctggctgacagtttcctgctggcc
agacacagccagaccatcagagtgcctgactgcccccaaggcaccaccctcatctactct
ggatactctctgctcttcatcaatggcaacaaaagggctcacggacaagacctgggctcc
attggcagctgcctgcctcgtttctccaccatgcccttcctgttctgtgacacggacaac
acctgtcgctacgccgcccgcaatgactactcctattggctgtccacggagaagcccatg
ccacgcagcatggacctgatcagtggagacgagataagcagctacatcagcaggtgttca
gtgtgtgagggcagctccaatgccatggccatccacagccagaccgcccagctcccagac
tgtcctggtgactgggaatccctgtggactggatactcctttgtcatgcaaacgggtgcg
ggtgctgaggggtcgggccagcctctgggctccccaggctcgtgtctagaacacttccgc
caggtccccttcatcgagtgtcacggccggggaacctgtaactacttccctgactcctac
agcttctggctggccttgctcgaccccaaccacatgttcagtaagcctgtgccccagacg
gtgaagggacctcttctagagaatgtcatcagtcgctgccgcgtatgcaggaaaccacaa
agcaatgacaaatccagccaggctcaagcgatcactcaaaatatttggaacatctaa
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integrated database retrieval system
