Oncorhynchus nerka (sockeye salmon): 115103353
Help
Entry
115103353 CDS
T07952
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115103353
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115103353
09142 Cell motility
04820 Cytoskeleton in muscle cells
115103353
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115103353
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115103353
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115103353
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115103353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115103353
NCBI-ProteinID:
XP_029480100
LinkDB
All DBs
Position
LG20:complement(67540626..67614487)
Genome browser
AA seq
1658 aa
AA seq
DB search
MRTALLCFALGVMLRGIEAKDCACTGKSMCHCEGVKGNKGERGFAGETGPPGSVGHPGSE
GHLGPVGPKGDVGPHGPPGTDGDRGPEGKEGFSATPGLPGIPGLQGPMGQPGSSGCNGTE
GERGATGPAGPSDGDYGLRGLPGAPGPKGESQMLIGFGQSGRPGPRGRDGDQGVHGVTGP
TGQQGDVGHRGVVGLLGLPGIPGFKGQEGRSSSIPGSGGPKGHQGPPGFPGPKGIKLYAH
APSDLKGETGDLGEKGCKGSPGYAGQVNFKEKGDQGGIGTEGRPGKDGRQGPAGYEGRKG
NPGLAGPDGIPGPRGQKGVQGQDGDPGEVTMIGCDVIGPKGQPGFTGPPGPPGVTGPPGA
TGFEGPPGTPGPNNGGDPYNRGAKGHSGPKGDEGDPGPIIQGEPGREGSQGTTGDLGPPG
PPGESDHLKGVIGPPGAKGAKGEQGYGGQYGSKGEKGEVCSLCTGKGSGGEPGPPGSPGQ
PGVPGFSAGPGPKGEPGFKGPSGSPGQQGLHGLSGVPGPPGPKGNSGSCNHQGIKGEKGA
PGPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYDGPLGLNGDTGDPGPPGPQGYPGPDGSP
GPVGIGPLGPSGPKGNSGVPGLPGTPGYRGQKGEPCSSVADQGVPGLPGKAGLPGTRGPP
GPRGGAGNPGEKGDSGVFSTLGRRGPAGQKGDKGQPGRPSTSGSGYPGRPGVMGLPGAQG
PKGDAGFETLGPAGPKGFPGGVGAQGPPGDPGVLGRPGSPGPPGINGSSGPKGSKGVDGS
QGPPGYAGTCCTEAPTGPPGLSGRPGLPGINGEMGLCGDPGTPGFGSSGPAGDPGPPGTS
GPVVQGLTGQMGGRGRDGLPGASGPRGDPGLEGRSGPGPDGPPGPEGPPGPKGSVGPDGE
KGHSGVPGSVGDDGRPGPCGPSSDTVIHGPPGDPGIHGLPGFHGAKGHPGYPGPKGIDGR
DGDPGNGPRGCPGDPGADGLCSGEPGPSGLRGNMGLMGLPGPHGTQGGLGSNGDAGLDGR
PGPRGPKGTKGESSCAKPGLPGSPGQKGEPALNNKHDSKGMKGSPGYAGPPGSQGPSGAK
GDPGHHGAQGPAGQPGTDGPPGPPGLPASHGAPGQPGLPGPPGPYGPKGNQGHDGIPGPA
GQKGETLIVRSTPGPRGKNGLPGPKGDVGFPGPTPPGPPGCPGDQGHRGNEGPQGSRGRP
GFGGVCVNGLKGDAGSHGNPGSPGQQGPQGQPGSGGYECKGDRGDLGAPGGRGLDGLTGD
LGPPGLPGPGSIPGPPGPIGSPGHSGTPGVPGEMGDPSFNPGPKGPNGSRGPPGPPGCPG
LDVPVRPEKGDPGPPGYTGNQGPPGHSGLPGQPGLTGLPGPEGQQGHSPPGLPGFPGWKG
DKGSPGLTGPLGYRGFPGQKGPLGPRGSSTAGLADSFLLARHSQTIRVPDCPQGTTLIYS
GYSLLFINGNKRAHGQDLGSIGSCLPRFSTMPFLFCDTDNTCRYAARNDYSYWLSTEKPM
PRSMDLISGDEISSYISRCSVCEGSSNAMAIHSQTAQLPDCPGDWESLWTGYSFVMQTGA
GAEGSGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLDPNHMFSKPVPQT
VKGPLLENVISRCRVCRKPQSNDKSSQAQAITQNIWNI
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgcgttgctttgttttgctttgggggtgatgctgcgaggaattgaggcgaag
gattgtgcgtgtactgggaagtccatgtgtcactgtgaaggagtcaaaggcaacaaggga
gaaaggggttttgcaggagagacgggtccacctgggtcggttgggcatccaggctcagag
ggtcaccttggacctgtggggccaaagggagatgtgggccctcatggacctccaggaaca
gatggcgatcggggacctgaaggtaaagaaggattttctgcgacaccaggtctaccgggc
atcccaggccttcaaggaccaatgggccaaccaggttcctcaggatgcaatgggacagag
ggtgagagaggtgctactggtccagctggtccctctgatggtgattatggattaagaggt
ttacctggagcacctggaccaaagggtgaatcccaaatgttaattgggtttggacagtca
gggagacctggaccccgaggaagggacggtgaccagggtgtccacggggtaacaggaccg
acaggacaacaaggggacgttgggcaccgtggtgtcgttggattgctaggtctacccggg
atcccagggtttaagggtcaagagggacgcagctccagtatccctggctctggtggtcca
aagggacaccaagggccccctggattcccgggacccaaagggatcaaactatatgcccac
gctccctccgatttgaagggggagacaggggatctgggtgagaagggctgtaagggttca
cctggttatgctggccaggtcaactttaaggaaaaaggggaccaggggggcattggcact
gagggaagaccagggaaagatgggcgtcaagggcccgctggatatgaggggagaaagggg
aatcccggtttagcaggacctgatggaatacctggaccgcggggacaaaagggtgtccag
ggtcaagacggagaccctggggaggtgaccatgattggctgtgacgtaattggccccaaa
ggacaaccaggatttactggccccccggggccccctggggttactggtcccccaggtgcc
actggattcgaggggcctcctggtactccaggtcctaacaacggaggagatccctacaat
cggggagcgaagggccacagtgggcctaaaggggatgaaggagacccaggacccatcatt
cagggagagccaggcagggaaggctcacaaggaacaactggagaccttggacccccggga
ccacctggagaatcagatcatctgaagggtgttatcggacctccgggggcaaagggagcc
aagggagaacaagggtatggtggccaatatggatcgaaaggtgagaaaggggaggtctgt
agtttgtgtacgggaaaaggatctggaggagagccaggacccccaggttcccctggtcag
cctggagtcccaggctttagtgcaggaccaggacccaaaggagagccaggattcaaagga
ccctcgggatcacctggacaacagggtctccatggcctttcaggtgttccaggacctcca
gggccaaaaggaaattcaggttcctgcaatcaccaggggataaagggagagaaaggagcc
ccaggaccagctggtagatcagggctggacggcctatacggggcccctggctttcgtgga
cgcaagggccaacaaggccctaagggtgatccatacgatgggccactgggtctgaacgga
gatactggtgacccaggccctcccgggccacagggatacccaggaccagacggttcacca
ggtccagtaggcatagggccgcttggcccctcaggacctaaaggcaatagtggggtacca
ggtctacctggtacacctggttaccgaggtcagaagggcgagccctgcagcagtgtggct
gaccagggagtcccaggcctaccgggaaaggcggggctgccgggcacacggggcccccca
ggtcctcgtggtggtgctggtaacccgggggagaaaggggacagtggtgtattctccacc
ttgggaagacgaggacccgctggacagaaaggtgacaaagggcagccgggacgcccaagt
acctctggaagtggctatcctggacgacccggcgtaatgggactccctggggctcaaggg
ccaaagggtgatgctgggtttgagaccctaggtccagccggccctaaaggtttcccaggt
ggtgttggggcccagggccctcctggagatccaggagtactgggccgaccagggagtccg
ggaccacccggcatcaatgggtcttcaggccccaaaggaagtaaaggtgtagatggttcc
caaggacctcctggttacgcaggtacttgctgtactgaagccccaaccggaccaccaggg
ctgtcaggcagacctggactcccaggtattaatggagagatgggtttgtgcggggaccct
ggcaccccggggtttggaagctcaggtccggctggtgaccctggtccccctgggacctcc
ggacccgtagtgcaaggcctgactggacagatgggaggcagagggagagacgggttacca
ggtgcatcaggtcctagaggtgaccctgggctggaaggaagatctggaccgggccctgac
ggcccacctggacctgaaggaccacccggtcccaaagggtcggttggccctgatggggag
aaaggtcacagtggtgtaccaggctctgtgggggacgacgggcgcccaggcccttgtgga
ccatcatccgatacagtcatacatgggcccccaggggaccctgggatacatggtctgcct
ggtttccatggtgctaaaggacaccctggatatcctggacccaaaggcattgatgggagg
gacggtgacccaggaaatgggccgagaggctgtccaggtgatcctggggctgatggactg
tgctcaggagaaccaggcccatctggactcagaggaaatatggggctcatgggtctacca
ggtccccatggaacacagggagggctgggttccaatggagacgcaggactagacggtagg
cccggtccacgcgggccaaaaggaactaaaggagagtccagttgtgcaaaaccaggcctc
ccaggatcacctggacagaagggcgagccagccttgaataacaaacatgactccaaagga
atgaaaggctctcctggttacgcaggtcctccaggctcccaaggaccttctggagccaaa
ggagacccaggacaccatggagcccaaggtcctgctggccaaccaggtactgatggtccc
ccaggccccccaggactccctgcatcacatggagctccaggacaaccagggttacctggc
cctcctggtccctatggtcctaaaggtaaccagggtcacgatggcattcctggacctgct
ggtcagaagggagagacactgattgtgagatcaactcctggcccacgtggaaagaatgga
ctgccaggtccaaagggagatgtgggattccctggccccacccctccggggcccccagga
tgtccaggagatcagggccaccgaggcaacgaaggaccccagggttctcgcgggaggcca
gggttcggtggtgtttgtgtcaacgggctgaaaggagatgctggttcccatggcaaccct
ggaagccctggacagcagggtccacagggacagccagggtctggaggctatgaatgtaaa
ggggacaggggagacctgggcgctccagggggcaggggcttggacgggcttacgggggac
ctcggacctccagggctaccgggaccaggatccatccctggacctccaggaccaatcggt
tccccaggtcactctggaaccccaggagtccccggtgagatgggtgatcctagttttaac
cccggcccgaaaggaccaaatggatccagaggcccgccaggaccaccaggttgtccgggg
cttgatgtgccagtgagacccgaaaagggggatccgggcccacccggttacaccggtaac
cagggacctccaggtcacagtgggctgccaggacaaccaggattaacaggcctcccaggc
cctgagggtcaacagggacacagccctccaggcctgcctggcttccccggatggaaggga
gacaaaggatcgccaggactgacagggccgttgggctaccgggggtttccgggtcagaag
ggtcctcttggcccacggggcagcagcacggcaggcctggctgacagtttcctgctggcc
agacacagccagaccatcagagtgcctgactgcccccaaggcaccaccctcatctactct
ggatactctctgctcttcatcaatggcaacaaaagggctcacggacaagacctgggctcc
attggcagctgcctgcctcgtttctccaccatgcccttcctgttctgtgacacggacaac
acctgtcgctacgccgcccgcaatgactactcctattggctgtccacggagaagcccatg
ccacgcagcatggacctgatcagtggagacgagataagcagctacatcagcaggtgttca
gtgtgtgagggcagctccaatgccatggccatccacagccagaccgcccagctcccagac
tgtcctggtgactgggaatccctgtggactggatactcctttgtcatgcaaacgggtgcg
ggtgctgaggggtcgggccagcctctgggctccccaggctcgtgtctagaacacttccgc
caggtccccttcatcgagtgtcacggccggggaacctgtaactacttccctgactcctac
agcttctggctggccttgctcgaccccaaccacatgttcagtaagcctgtgccccagacg
gtgaagggacctcttctagagaatgtcatcagtcgctgccgcgtatgcaggaaaccacaa
agcaatgacaaatccagccaggctcaagcgatcactcaaaatatttggaacatctaa
DBGET
integrated database retrieval system
