Oncorhynchus nerka (sockeye salmon): 115103710
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Entry
115103710 CDS
T07952
Symbol
cfap52
Name
(RefSeq) cilia- and flagella-associated protein 52 isoform X1
KO
K24728
cilia- and flagella-associated protein 52
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
one03037
]
115103710 (cfap52)
Cilium and associated proteins [BR:
one03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
115103710 (cfap52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
WD40_like
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_NOL10_N
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
WDR54
Motif
Other DBs
NCBI-GeneID:
115103710
NCBI-ProteinID:
XP_029480448
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All DBs
Position
LG21:3708845..3723684
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AA seq
619 aa
AA seq
DB search
MAGDAQDIPRLELEAVIGFNGHVFSGLRVHPDREHFIYPLGCTVILKSLKDGKQEFLHGH
TNNVSCVTVSKSGRYIASGQVTFMGFKADLIIWDYEKRAIHARLQLHKAKVEGLAFSPND
KYLVSLGGQDDGSIVVWNLESKEAICGSPASAHSAGHCLTIEYTNHSDNIFISAGNGTMR
VWEIDLPNRKIRPTECQTGQLKRIVKCIEIPDDDLFFYCGTTSGDILKVNLKTRLLNSCG
PRKQKFSKGVNTLKVLKSGDILVGSGDGMFTLCSGPNFKTIKKVQLEGGVTSIAVRGEGH
QFFAGTEAAQIYRFGYTDFKEELIATSHNSAVNDVAFPFGSSELFATCSQDDIRVWHAET
SKELLRISVPNMTCNALDFMIDGHSIISAWNDGKIRVFAPETGRAMLVIHNAHSMGVTAI
AGTRDCKRIVSGGGEGQVRVWEILQGCHRLIETMKEHKATVTSIKIKSNDKECVTASSDG
ACIIWDLVRFVRNQMVLANTLFRSVCYHPEEYQIITSGTDRKIGYWEVYDGSAIRELEGS
LSGAINGMHISQSGQHFVTGGDEKLVKVWDYSEGEVTHVGVGHSGSITSVTISSDNGSMV
STSSDGAVLRWRYPHPSSP
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggctggagatgcgcaagatattccacggcttgagctggaggctgtaattgggttcaat
ggacacgtattttctggcctcagagtgcacccagaccgagaacacttcatctatcctctt
ggttgcactgttattttgaagagcctgaaagatggcaaacaggagttcctccatggacac
accaacaacgtctcctgtgtcactgtgtccaaaagcggacgctacatcgcttctggacag
gtcaccttcatgggcttcaaggctgatctgatcatctgggattatgagaagagagcgatc
cacgccagactacagctccacaaagcgaaggtggaaggacttgccttctcccccaatgac
aagtaccttgtgtccctgggtggacaggatgatggaagcattgtggtgtggaaccttgag
agcaaagaagcgatctgtgggagcccggcctctgcccacagtgcaggccactgcctcacc
atcgagtacaccaaccacagcgacaacatcttcatctccgccggcaatggtacgatgcgt
gtttgggagatagaccttccaaataggaagatccggcctacggaatgccagacaggacag
ctgaagaggattgtcaaatgcattgagatcccagacgacgaccttttcttttactgcgga
accaccagtggtgacatcctgaaggtcaacctgaagacccgcctcctcaacagctgtggg
ccacgaaaacagaaattcagcaagggtgtcaacacactgaaggtgctgaagtctggggac
atcctggtgggctctggggatggcatgttcactttgtgctcgggacctaacttcaaaacc
atcaagaaggttcagttggaggggggagtgacgtccatcgctgtgagaggcgagggccac
cagttctttgcaggaacagaggcggctcagatctaccgttttggctacacagacttcaag
gaggagctgatcgccaccagtcacaacagtgcagtcaacgacgtggccttcccttttggc
tcgtcggagctgtttgccacgtgttcccaggatgacatcagagtgtggcacgccgagacc
tccaaggagctgctgcggatctccgtccccaacatgacctgcaacgccctggacttcatg
atcgacggacacagcatcatcagcgcctggaacgatgggaagatccgtgtgtttgcccca
gagactggcagagccatgctggtcatccacaatgcccacagcatgggcgtgactgccatc
gctggcaccagggactgcaagaggatcgttagtggaggaggagagggacaggtacgtgtg
tgggagatcctgcagggctgtcaccggctcattgagaccatgaaggagcacaaagccacc
gtcaccagcatcaagatcaagagcaacgacaaggagtgtgtcaccgccagctcggatggg
gcctgcatcatctgggacttggtgcgatttgtgaggaatcagatggtcctggccaacact
ctgttcagaagtgtgtgttaccaccctgaggagtaccagatcatcaccagtggcaccgac
agaaagattggttattgggaggtgtatgatggctcagccatcagagaactggagggctcc
ctgtcaggagccatcaatggcatgcacatctcacagagcggacagcactttgtcactggt
ggagacgagaagctggtgaaggtgtgggactactcggagggcgaggtgacccacgtgggc
gtcggccacagcggcagcatcaccagcgtcacaatctcctccgacaacgggagcatggtg
agcaccagttccgacggggccgtgctccggtggaggtacccccatccctcctctccctag
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integrated database retrieval system
