Oncorhynchus nerka (sockeye salmon): 115103758
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Entry
115103758 CDS
T07952
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115103758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115103758
03036 Chromosome and associated proteins [BR:
one03036
]
115103758
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115103758
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115103758
PBAF complex
115103758
GBAF(ncBAF) complex
115103758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
115103758
NCBI-ProteinID:
XP_029480533
LinkDB
All DBs
Position
LG3:9228001..9246216
Genome browser
AA seq
1095 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGVGTTVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKTFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSLTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPTSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEDEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNSKKDSENTPVKGGAVADLDDLEDDSVISGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMLNFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKMDT
DSDSQQPDKAESKDEAEKPSESAEKLAEGEKVKSEMAEPSEREEGESEGGEGKATADKDK
EEAMETSEEDKEEQGTMEEEEEERKKLEPDGGEGNIATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYA
EMKARQQMEQQQASAAAQGPAPHHGPPGPGMHHGPPHHGPPPAMHSGHGPPGPGFHPMGP
HHPQQTGPMGGPGQPMPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGPSPVQPDGMPPA
SVGPQAAAPARVADN
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggacctgcagccggccct
gtgggcgttggtactacggtgggccgtaagaaagatggaggtccttcgtcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtacaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtgaacaaccctgccctcaccaag
ttacctaccaagaccttcctggacttcaaggcagggggtgctctgtgtcatatcctgggc
tccacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtggagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccaaccgtgttcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaaaagacaccagggctctatcaccgaggacaagtctaaggccacc
catcatatctacccctctctaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagtgacgtggagggggatgtggaggacccacccacctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacaccgatgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagctgagtcccgcaagaagggtggc
aagaaggggaaccctgggtctcactggaagcgtcgtggccaccgtggcgaggacgaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaactctaagaaagacagcgagaacaccccagtgaaggga
ggggcagtggcagatttggatgatctggaggatgactctgtgatctctggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccacgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctgacgggtgacgtgtgtgccgtc
atgagggtccatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccgccccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgccccccacagatcccttctggccagcagatg
ctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aatgacctctactccaagaagaaccccaagagtaaaggaaccagcggtggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggaacacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaattctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tctgtggtggacccccgtgtggcctccgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgagccagcagaaacagagaagatggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggacgaggcagagaagcccagt
gagtctgctgagaagctggctgagggagagaaggtgaagagcgagatggccgagccgtcg
gagcgggaggagggggagagcgagggaggagagggcaaggctacagcagacaaagacaag
gaggaggccatggagacctcggaggaggacaaggaggagcagggaacgatggaagaggag
gaagaggagaggaagaagttagagccggacggaggggagggtaacattgccactgctgcc
gctgctgccctcgcctcagctgccaccaaggccaagcacctggcggcggtggaggagagg
aagatcaaatctctggtggctctgctggtggagactcagatgaagaagctggagatcaaa
cttagacactttgaggagctggaaaccatcatggaccgagagaaagaggctttggagttg
cagaggcagcagctgctgacggagcgccaggccttccacatggagcagctgaagtatgct
gagatgaaggctcgccagcagatggagcagcagcaggccagtgcagcggcccagggcccc
gcaccccaccatggtcccccagggccaggcatgcaccacggacccccccaccacggaccc
cctcccgccatgcactctggacacggcccccccggccccgggttccaccccatgggtccc
caccacccgcaacagacaggaccaatgggagggcccggtcagcccatgccagggcgcatg
atgcctggtggcccccccactggcagcatgcctcccatgatgggtccccgccaccctgga
gcccccaacggcatgtaccctggcccctcgcctgtacagcctgatggtatgcccccagcg
tctgtgggacctcaagcggcagccccagcacgagttgctgacaactaa
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