KEGG   Oncorhynchus nerka (sockeye salmon): 115103789
Entry
115103789         CDS       T07952                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03013  Nucleocytoplasmic transport
one03015  mRNA surveillance pathway
one03040  Spliceosome
one05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115103789
  09122 Translation
   03013 Nucleocytoplasmic transport
    115103789
   03015 mRNA surveillance pathway
    115103789
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    115103789
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115103789
   03041 Spliceosome [BR:one03041]
    115103789
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     115103789
    TREX complex
     115103789
Spliceosome [BR:one03041]
 Complex C
  Other components
   EJC/TREX
    115103789
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115103789
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 115103789
NCBI-ProteinID: XP_029480580
LinkDB
Position
LG21:complement(5683500..5686349)
AA seq 272 aa
MADKMDMSLDDIIQQSKKGGGGRGNRGGRSRGSSGRGGSGGRPGGAVSGGRTGGSGPMRS
RQNFSGDRSDSRPTPYSRPRELPDKWQHDMFEGGFGGNAGGGGGAGGGGVETGGKLLVSN
LDFGVSDADIQELFVEFGTLKKAAVHYDRSGRSQGTADVHFERRADALKAMKQYNNVPLD
GRAMSIQHVTSQIRDDNQRRPSQSSNGGGGGFNRDRIGRPNFSERRGGGDRRGGRGSRGR
GRGGRGGGKPQQLSAEELDAQLDAYNAKMETS
NT seq 819 nt   +upstreamnt  +downstreamnt
atggctgataagatggatatgtctttggatgacattattcaacaaagtaagaaaggtgga
ggtggccgcggaaatcgaggaggccgcagccgaggatcatcgggtcgaggtgggagtgga
gggcgacccggtggcgctgtctctggaggccggacaggcggatccgggcccatgaggagt
cgacagaacttcagcggagacagaagcgacagcagacccacgccatacagcaggcccaga
gagcttccggacaaatggcaacacgacatgttcgaaggtggctttggcggtaatgctggt
ggtggcgggggagcaggcggtggcggtgtagagactggtggcaagctccttgtctcaaac
cttgacttcggtgtctctgacgctgatatccaggagttgtttgtggaatttggtacattg
aagaaagcggctgtgcattatgaccggtctggccgcagccagggaaccgccgacgtccac
tttgagaggagggctgatgcactcaaagccatgaaacagtacaacaatgtaccactcgat
ggccgcgccatgagcattcagcacgtcacatcacaaatcagagacgataaccagagacga
ccttcacagagttcaaatggaggcggtggtggattcaacagagaccgaatcggacgcccc
aatttctcagaaaggcggggaggcggagacaggcggggaggcagaggctccaggggcagg
ggtagaggcggacgtggtggtggcaaaccgcagcagttgtctgctgaagagctggatgcc
cagttggatgcttacaatgccaagatggagaccagttag

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