Oncorhynchus nerka (sockeye salmon): 115103811
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Entry
115103811 CDS
T07952
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115103811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115103811
03009 Ribosome biogenesis [BR:
one03009
]
115103811
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115103811
Spliceosome [BR:
one03041
]
Complex A
U1 snRNP components
U1 related factors
115103811
Complex B
115103811
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-60S particles
Helicases
115103811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115103811
NCBI-ProteinID:
XP_029480631
LinkDB
All DBs
Position
LG21:complement(6782357..6789870)
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AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKEVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPSIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGGGGSSSYRDKDSDRGFGGGPKSAFGAKT
QNGGGYGGSTYNKGASSGGSYGNSYSSNGQASFGATNQVGAFGGQNFQAPPQFGAAQAAT
QNGMGRPPFPFNPQAQQPQQPLPMVPYSMPPPFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattttccgacagagatcgtggcagagacagggggtatggaggtgcacctcgt
tttggaggcggcggtggtggcagtaggggtggacccccacaggggaaatttggcaaccca
ggtgaaagactgcgtaaaaaacactggaacatggatgagctcccaaagtttgagaagaac
ttctaccaggagcacccggatgtgacccgcagaccacctcaagaggtggagaactacctg
agaagtaaagaagtaacagtgaaaggcagagactgccccaagccaatgatgaagtttcat
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggttgggctgagcca
acacctatccaggctcagggctggcctctggccctcagtggcaaagacatggtgggcatc
gcccagacaggctctggtaaaacccttgcttatctgctgccttcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggcccagcaggtgcagcaggttgcagctgagtacggcagggcctcccgtctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgagcgaggt
gttgagatctgtattgccaccccagggcgtctcattgacttcctggaggctgggaagacc
aaccttcgcaggtgtacctaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgtcagctggctgaggacttcctaaagcagtat
gtccagatcaacgtgggcgctctgcagctcagcgccaatcacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctcgaagagatcatg
agcgagaaggagaacaagaccatcatatttaccgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acgggcactgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagcttctccagatggcggaggcc
agaggaggtcgtggaggggggggaagaggtggctttagggatgaccgacgagataggtat
tctggggggaggagttacggtggtggtggtggtggtggtggtggtagtagtagttacagg
gacaaggatagcgacagggggttcggtgggggaccaaagagtgcctttggcgcaaaaacc
caaaatggagggggctacgggggtagcacctataacaagggcgccagctctggcggtagc
tacggcaacagctacagcagcaacggacaggctagcttcggcgccaccaatcaggtgggt
gcgttcggtggccagaacttccaggcccctccacagtttggagccgcacaggcggccacc
caaaacggcatgggtcgcccgccgtttccttttaacccacaggcgcagcagccccaacaa
cccctacccatggtaccctactctatgcctcctcctttcccacagtaa
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