Oncorhynchus nerka (sockeye salmon): 115103833
Help
Entry
115103833 CDS
T07952
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115103833
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
115103833
3'-5' decay
Other 3'-5' decay factors
115103833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
PhoH
AAA_16
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
TPR_1
Motif
Other DBs
NCBI-GeneID:
115103833
NCBI-ProteinID:
XP_029480667
LinkDB
All DBs
Position
LG21:complement(7957357..8024804)
Genome browser
AA seq
2024 aa
AA seq
DB search
MADRRAEKSCEEASGLLARREYEAAVSHCTDALLALAPPSSGPPASNAPNDTVTPLRSRA
LLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLSKSL
FGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEEVRDGWQFRPPPRGVTSSEE
YTLCKRFLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYMEALI
EKWMNSLSPEKVLSDYLDGVSVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIALLY
DAHRPHFSITGVSVGDAGAQRLQAAAEGCQEWTAGEEALAANNGMDHCVYTVVVGFSTEI
FGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIVEFS
PNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKEVSK
FNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLL
PLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQFQLN
RLPLCEMHYALDRIKDNGILFPDTSLTPTIPWSPNRSKSVVEGNKENQKWHWLRVPDLNL
PDIDPSTPVPWQWDEQLDPRLNAKQKEAILAITTPLTIPLPPVLIIGPYGTGKTFTLAQA
VKHILKQDDSRVLICTHSNSAADLYIKDYLHPYVEAGNAHARPLRVYFRNRWVKTVHPLV
QQYCLISNTQYTFQMPEREDILRHRVVVVTLSTSQYLCQLDLEPGLFSHILLDEAAQAME
CETIMPFALASKSTRIVLAGDHMQLSPFVYSEFSRERNLHVSLLDRLYEHYPAEFPCRIL
LCENYRSHEAIISYTSELFYDGKLMASGKQPSHKDFYPLTFFTARGEDVQEKNSTAYYNN
AEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVSPYADQVFRIRAELRKKRMHEVSVERVL
NVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRA
QSLVAVVGDPIALCSVGRCRKFWEKFISICHENASLHGITFEQIKAQLEALELKKTYVLN
PLAPEFIPRALRPQPAQHPHHHQHHHQHPHPQGHTAIKQPQQQQPQQSPPKGKGQHANHT
EHFPPEGFVQPNPAVLMGNTIRAFTPPLGGTPGGMGKSPSPVQRIDPHTGASILYVPAVY
GGNMVMSMPLPSVPIQLPWPGYQNRFAMDPRIMSHQAAMAYNLNLLQAQNRGSPIPYGGV
THPSPLGMGQQTSPDKELQADSVRNGKMDGCAKSEQSLLQTPERKTSEMKDKPGECDPGG
GRSLDSQTDGLGFPNAMLHRKDNSSQRPLNYHLAPPNPAFAPHPVGRAFPPQYPGVSRLP
FRVPTQHPGGGPGMGQPNQHHSAQLSPAYASGSHNPSFFGGAMASHRGVPETEEEGPEEI
GNSIRSQMSHQVGHHPALSQPSRVNSFGEENQEGGLGDGMDSLTLEALSQQARLGQWGEP
GPFLQGGVAFPLPQQLAHLAQPGLARFPPQLLARANWRMSAGMEDEAGGPPFTRFPGLLR
EMPPQDQPDPRDPVEMQPPPQSRLLQYRQVQSRSPGDPSSPSSVTSNHTGPFPPGPYPGR
DPTSHELELLNNPGLHQHPGNQLYNPNAYPHQLGNSTTPPPQVKYLLQEAQWPHGGAGMA
QNHMLGQGFPYGLPVMAHPSRQEQVHLMQLHHQQQQHQQQQQGQGPGQEPYHPLSPRTTG
ATALHNVEEYEPRGPGRPLYQRRISSSYPDEGSPANAAALAQQQPQPCPPDPQEHPHTHQ
HPHPHAPYGYPPPELWPGNGGGPGPFQNIPCNGASTLIQHRDLLVASKALRQAAEEQMKA
EAAAAVAAAQPPAHSLQHLGQFPPLMPNSKQQQPQAAPEPGQVSGGPQNPGKPPTMSYAS
ALRAPPKPRARPEQVKKHSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6075 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcggattgttagccaggcgg
gagtacgaggcggcagtgagccactgcacagatgcgctgctggccctcgcccctcccagc
tctggaccccccgcatccaacgcccccaacgacacggttacccccctccgcagccgcgcc
ctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagcagatgaagac
tgcaaacatgttctggctgaggagctggccaagggagacgggtcgtttcaggccagcctg
cgctgcatgctgttggacggcagcctgcacgaagtggccggcctcctctccaagtccctg
tttggggagcctctgaacggcatcgtcacaaaggacttaactagattaaaaatgcttctc
tcagaaattgaagccattcgtagcgagatggccacagaatatacagacgacaacgaggaa
gaagtacgggatggatggcagtttcgccccccgcctagaggagtcaccagcagtgaggag
tacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcccagtgcacg
tcggcccactcccaggaggagctgatggagtggcagaagcgctacgcctcgcgcctcatc
cgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggaggcgctcatt
gagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttggacggcgtc
agcgtggaacacagctccaacctctccgtaacggtcaccaccaagaaatcagctcactcc
tggaccttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgccctgctctac
gacgcccaccgaccccacttttccatcacgggcgtgtctgttggcgatgccggcgcccag
cggctgcaggcggcggccgagggctgccaggagtggacggcgggcgaggaggcgctggcg
gccaacaacggcatggaccactgcgtctacacggtggtggtgggcttcagcaccgagatc
ttcggcaccttccgccagaccatcgtcttcgactttggctcggagcccgtgctgatgcag
cgcatcatggtggacgcagcctccatagaagacctggagcacctaatgcaagccaggcag
cagctcctgatgacagccaagcgctgggacccgtcctgcaagaccatcgtggagttcagc
cccaacgagacggtggacctggaccgcagcctgctggcccgctaccagatccccctgtcg
gccgaccagctcttcacgcagtcggtgctggacaagaccctgacccgggacaactaccag
gcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaagtcagcaag
ttcaacatcaaagtcaacctccagctggtcaccagcttcatgctgacgggcatctcgggt
ggcgccaagtacgcccagaacgggcagctcttcgcccgcttcaagctgactgagactctg
tcggaggacacgctagcgggccgccttgtcatgaccaaggtgaactctgtcttgctgctg
cccctggcccgccaggagtggtgcagccagcccccgggggtcaaggagcgggtctacgag
gcctgcattgaagagaagaccaaggactacatcttcctgcggatatgcaaggactgctgc
gaggagctgggcttgatacctgatagggaactgcaggtggagctgcagtttcagttgaac
cgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaacggcatcctg
ttcccagacaccagccttacccccaccattccctggagccccaacaggtccaaatcggtc
gttgagggaaataaagaaaatcagaagtggcactggctccgtgttccagatttgaatttg
cctgacatagatccttcaacccctgttccatggcagtgggacgaacagctggacccgcgt
ctcaacgccaagcagaaggaggccatcctggccatcaccacgcctctaaccatccccctg
ccccctgtgctcatcatcgggccctacggcacgggcaagaccttcaccctggcacaggcc
gtcaagcacatcctcaagcaggacgacagcagggttctcatttgcacccattccaacagt
gcagctgacctgtacataaaggactaccttcatccgtacgtagaagcggggaacgcgcac
gcaagacctctcagggtatacttcaggaaccgctgggtgaagactgtccacccgttggtg
cagcagtactgtttgatctctaacacacagtacactttccagatgcccgagagagaggac
atcctccggcaccgcgtggtggtggtcaccctcagcacctcccagtacctctgccagctg
gacctggagccagggctcttctctcacatcctattggacgaggcggcccaggccatggag
tgtgagaccatcatgcctttcgcgctggccagcaaaagcacccgcatcgtgctggctgga
gaccacatgcagctcagtccgtttgtgtacagcgagttttctcgagagcggaacctgcat
gtgtcgctgttggaccggctgtacgagcactacccagccgagttcccctgccgcatcctg
ctctgtgaaaactaccgctcccacgaagcgatcatcagctacacgtcagaactgttctac
gacgggaagctgatggccagcgggaagcagccgtctcacaaggacttctacccgctgacc
ttcttcacggcgcgcggcgaggacgtccaggagaagaacagcacggcctactacaacaac
gcagaggtgtttgagatcgtggagcgggtggaggagatgcgtaagaagtggccggtggcg
tggggcaagctggacgagggcagcatcggcgtggtgtcgccctacgccgaccaggtattc
cgcatccgcgccgagctccgaaagaagaggatgcacgaggtcagcgtggaacgggtgctc
aacgtccaaggtaagcagttccgggtgctcttcctgagcactgtgcgcacgcggcacacc
tgcaagcacaaacagacggccatcaagcggaaggagcagctggtggaggactcgacagag
gacctggactatggcttcctgtccaactacaagctgctcaacacggctatcactcgcgcc
cagtccctggtggccgtggtgggagaccccatagcgctctgttcggtgggccgctgcaga
aagttctgggagaagttcatctccatctgccacgagaacgccagcctgcacggcatcacc
tttgagcagatcaaggcccagctggaggcccttgagctcaagaagacctacgtgctcaac
ccgctggcgcccgagttcatcccccgcgccctgcggccccagcctgcccagcacccccat
catcaccaacaccatcaccaacacccacacccccagggacacacggccatcaagcagccc
cagcagcagcaaccacagcagtctcccccgaaggggaaaggtcaacatgcgaaccacacg
gagcacttcccacctgaaggatttgttcaacccaaccccgcggtgttgatgggcaacacc
atccgggcgttcacgccgcccttagggggcacacctggcggcatgggcaagtcccccagt
cccgtgcagaggatagacccccacacgggtgccagcatcctctacgtgcccgccgtctac
ggaggcaacatggtcatgtccatgccactgccctctgtccccatccagctgccgtggccc
ggctaccagaaccgctttgccatggacccacgcatcatgagccaccaggcggccatggcc
tacaacctgaacctgctgcaggcccagaaccggggctcgcccatcccctacggcggagtc
acacacccctcccccttgggcatgggccagcagaccagtcccgacaaggagcttcaggct
gattccgtcagaaacggtaaaatggacgggtgtgcaaagtccgagcagagtctgctgcag
acaccagagaggaagacctcggagatgaaggacaaaccgggagagtgtgatccgggcggt
ggtcggagtctggactctcagacggacggactgggcttccccaatgccatgctccaccgc
aaggacaactcaagccaaagaccccttaactaccacctggcgccccccaacccggccttt
gccccccatcccgtgggtcgggccttccccccacagtaccccggcgtgtccaggctcccc
tttagggtgccgacccagcacccaggtgggggcccgggcatgggccagcctaaccagcat
cactcggcccagctatccccagcctacgccagcggcagccacaacccctccttctttggt
ggggccatggcctcccacaggggtgtgccggagactgaggaggaggggccggaggagatt
gggaattccatcaggtcccagatgagccaccaggtggggcaccacccggccctgtcgcag
cccagccgagttaacagcttcggagaggagaaccaggaaggaggcctgggagatgggatg
gactccctaactctggaggccctgagccagcaggcgcggctgggccagtggggtgagccc
gggcccttcctccagggcggtgtggccttccctctgccccagcagctggcccatctggcc
cagcccggcctagcccgcttcccccctcagctgctggcacgggccaactggagaatgagc
gccggcatggaggacgaggctggcggaccgcctttcactaggttcccaggcctcctaaga
gagatgcccccccaggatcagcccgatcccagggacccggttgagatgcagccccctccc
cagtcccgcctgctccagtaccgccaggtccagtcccgctctccgggagacccctcctcc
ccctcgtctgtaacctccaaccacaccggccccttcccccctggcccctatcccggccga
gaccccaccagccacgagctggagctcctcaataacccgggtctccatcagcacccgggg
aaccagctctacaaccccaacgcctacccccaccagctgggcaactccactaccccgccc
ccgcaggtcaagtacctcctccaggaggcccagtggcctcacggcggagctggcatggcc
cagaaccacatgctgggccagggcttcccctatgggctgcccgtcatggcccaccccagt
agacaggagcaggtccacctcatgcagctccaccaccagcagcagcagcaccaacagcag
cagcagggtcaaggcccaggccaggagccctaccaccctctctcccccagaacaacaggt
gccaccgcccttcacaatgtagaagagtatgaacccaggggtcccgggcggcccctctac
cagcggcggatctcctccagctacccagacgagggatcccccgccaacgctgccgccttg
gcccagcagcagccacagccctgcccgccagacccccaggagcaccctcacacacaccaa
caccctcacccccacgccccctacggctaccccccgcccgagctatggcccggcaacggg
ggcggccccggcccgttccagaacattccatgcaacggagccagcacactcattcaacac
cgggacctcctagtagcttccaaggccctgcggcaggcagcagaggagcagatgaaggct
gaagcggcagcagcagtagctgcggcccagcctcccgcccactccctccagcacctcgga
cagttcccccctctcatgcccaacagcaagcagcagcagccgcaggccgccccagagccc
ggccaagtctctgggggcccccaaaaccctggcaaaccccccaccatgtcctacgccagt
gccctccgcgccccacccaaacccagagctcgtcccgaacaggtcaaaaagcacagcgac
ccactttcccttctccaagagctgagcataggaagttcaaatggtagcaacggatactat
tcctattttaaatga
DBGET
integrated database retrieval system
