Oncorhynchus nerka (sockeye salmon): 115103925
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Entry
115103925 CDS
T07952
Name
(RefSeq) spastin-like isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115103925
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115103925
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
115103925
Membrane trafficking [BR:
one04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
115103925
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
115103925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_22
TIP49
Vps4_C
AAA_5
Mg_chelatase
DUF815
IstB_IS21
AAA_16
AAA_14
AAA_24
AAA_2
nSTAND3
NPHP3_N
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
115103925
NCBI-ProteinID:
XP_029480848
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All DBs
Position
LG21:complement(11266658..11298441)
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AA seq
593 aa
AA seq
DB search
MSSPEGRGSRKKRGPAGSPPDGGDICVQVSLHKRNVYYFFYPLLALFAVLRVLVLNFGVL
FAWLCERMSRAMVARPKQRAADEHANKVCKQDSGEQIRNSHKQAFEYISVALRIDEDDKV
HKEQAVQWYKRGIAELERGIAIKVAENGEKYERDKRLQAKMITNLIMAKDRLELLAKLCS
GPAQRDIYTESSNQSYHNGHLRSVSGAVPKKRDYLTTHSSHSLPRPKHTAKKTLAAGHGG
HQHSPSFSGPSSSLTQHRPAPQSNSNKGKVGCKPTTTTPTSMSPLKNRDMKNLKNVDSKL
ANLILSEIIDSGSSVRFEDIAGQELAKQALQEIVILPALRPELFTGLRAPARGLLLFGPP
GNGKTMLAKAVAMESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEID
SLLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRV
YVALPTEETRLKLVKNLLEKHGNPLAQKELSQLARMTEGYSGSDLTSLAKDASLGPIREL
RPEQVRNMAANEVRNIRFSDFVESLKKIKRSVGPQTLDLYVRWNKDYGDTTGV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgagttccccggaaggaagaggcagcagaaagaagcgaggccctgcagggtccccgccc
gacggaggggacatctgcgtccaggtgtcactacataaacgaaatgtgtactacttcttc
tacccactgctggcgttgtttgcagtgctccgtgtcctagtcttgaattttggcgtactc
ttcgcctggctgtgcgagcggatgtctcgcgctatggttgcgagacccaaacaacgggca
gcagacgaacatgcgaacaaggtgtgcaagcaggacagcggcgagcagattcgaaacagc
cacaaacaagcattcgagtacatctcagtggctctgagaattgacgaggatgacaaagtg
cacaaggaacaggcagtccagtggtacaaacgcggaatcgcagagctcgagaggggcatc
gcgatcaaggtagctgaaaacggcgagaaatatgaacgtgataaacgtctacaggccaag
atgatcaccaatctgattatggcaaaggatcgcctggagcttttagcaaagctgtgttca
gggccagctcagagagacatctatacagagagctcaaaccagtcgtaccataacgggcat
ctacgttcagtaagtggagctgtacccaaaaagagggactacctgactactcactccagt
cactccctcccacgaccaaagcatacggcaaaaaaaaccttggcggcaggccacgggggc
caccagcactcccccagcttcagtgggccctccagcagtctcacacagcacagaccggcc
ccccagtccaacagcaacaagggtaaagtgggctgtaaacccaccaccaccactcccaca
tctatgtccccactgaagaacagggacatgaagaacttgaagaatgtggacagcaagctt
gccaacctcatcctcagcgagatcatagacagtggctcatcagtgaggtttgaggacatt
gctggccaggagctggctaagcaggccctacaggaaatagtcatcctgcctgcactgagg
ccagagttgtttacaggcttgagggctccagcacgaggccttctgctcttcggtcctcct
ggcaacggaaagacgatgctggctaaagcagtggccatggagtccaacgccacattcttc
aacataagtgcagccagcttgacctcgaaatatgtgggggagggagagaagctggtgcga
gctctgtttgccgtcgccagagaactgcaaccctcgatcatcttcatagatgagattgac
agtctactctgtgagaggagagagggagagcatgatgccagcagacgactcaagactgag
ttcttgattgaatttgatggggtgcagtctggtggggatgagcgggtgttggtgatggga
gccaccaacagacctcaggagctggacgaagctgttcttaggcgatttgcaaaacgggtg
tatgtggctttaccaacagaagagacacggctaaaactggtcaagaaccttttggagaag
cacggaaatcctctcgcacagaaagaactgtcacagctagccagaatgacagaaggctat
tctggcagtgacctgacctcgctggccaaagatgcgtccctcggtcccatcagagagttg
cgtccagaacaagtcaggaacatggccgcaaacgaggtgaggaatatcaggttctctgat
tttgtggagtcactgaagaagatcaagaggagtgtcggaccacaaacgctggacctgtat
gtgcgctggaacaaggactatggggacaccactggtgtatga
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