Oncorhynchus nerka (sockeye salmon): 115103972
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Entry
115103972 CDS
T07952
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115103972
Membrane trafficking [BR:
one04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
115103972
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_9
LRR_14
Ig_2
V-set
LRRNT
LRR_Zer-1
Ig_VEGFR-1-like_5th
Ig_5
Motif
Other DBs
NCBI-GeneID:
115103972
NCBI-ProteinID:
XP_029480913
LinkDB
All DBs
Position
LG3:9908217..9928741
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AA seq
613 aa
AA seq
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MFVESVVRWGAWSILLQCGLLGVSAGDFPWPCPARCVCRLETLEVNCSDKQLTSVSEGFA
SGTQRINLSRNKLKTLGRRQFFGMTQLEDLDISDNLIAMIEVEAFQGLQNLKTLCIRSNR
LKIISVGVFSGLPSLRFLDLSENEILVFLDFTFRELVSLHQLEAGENDLVFISQRAFTGL
QNLQELNLDRSNLTSIPTEALSQLQSLTRLRMIRLTISALPNNAFRRLHRLRSLVISHWP
LLDKLASNSLIGLNLTSLVISSCNLSAVPYQALRHLVYLGYLDLSYNPITAIQGNLLGDL
LRLQELHLAGGNLLRIEPGAFRGLAYFRLLNVTSNQLSTLEDSAFHSVGNLQVLRLDGNP
LACDCRLLWVVRRRQRLNFDGRQPTCSTPDMVREREFRDFSEKELPRLFTCRQARIVDRR
SQEVRVEEGTTVLFSCKADGDPMPSFTWLSAQRIPLSTTGRIRVLSNGTLEVRYAQVQDS
GTYQCTAGNAAGNDSLYVSLYVKGFPRNRTMPFFTDEGWIESSHAPTANSSAQVANQYPF
DAKTLIIATTMGFLSFLSSVAICFVFMFFWSQSKGQIKHTATIDYVPRSSMGVGGGGGGG
GGGDAGKFTMKLI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtggagtctgttgtcagatggggggcatggagcatcttgctccagtgtggatta
ttgggcgtgtcagcaggggacttcccctggccttgccctgccaggtgtgtgtgtcggctt
gagactttagaagttaactgctctgacaagcagctgacttctgtgtctgagggcttcgct
agtggcacccagcgcatcaacttatctcgtaacaagctgaagacgctgggtcgtcgccag
ttctttggcatgacccagctagaggatctggacattagtgacaatctcattgccatgatt
gaagtggaggctttccagggcctgcagaacctcaagaccctgtgcattaggagcaatcgc
ctgaagatcatctctgtgggggtcttctccggactgcccagcctgcgcttcctggacctg
agtgagaacgagatcctggtctttctggactttactttccgtgagttggtgagccttcac
cagctggaggctggggagaatgacctggtgtttatctcccagcgggcctttaccggcctg
cagaacctgcaggagctcaatctggaccgcagcaacctgacctccatccccaccgaggca
ctatcccagctccagagcctgactcggctgcgcatgatccgcctcaccatctcggcgctg
cccaacaatgccttccgccgcctgcatcggctgcgtagccttgtcatctcccactggccc
ttgctggacaagctggccagcaacagcctgattggcctcaacctcacctcgctggtcatc
agcagctgcaatctcagtgctgtcccataccaggcactgcgccacctggtctacctgggc
tacctggacctgtcctacaaccccatcacagccatccagggtaacctgctgggggacctg
ttgcggctgcaggaactgcacctggctgggggcaacctgctccgcatcgagccaggggcc
ttcagggggctggcatacttccgtctgctcaacgtgacatccaaccagctcagcacactg
gaggacagtgccttccactcggtggggaatctgcaggtcctgcggctggatgggaacccc
ctggcctgcgactgccgactactctgggtggtccgccggcgacagcgcctgaactttgac
ggtcgccaacccacctgctccaccccagacatggtgcgagagcgggaattccgggacttc
tcagagaaagagctcccgagactgttcacctgccggcaggcccgcattgtagaccgcagg
tcccaggaggtcagggtggaggagggcactacggtgctcttctcctgcaaggcagatggt
gacccaatgccctcctttacctggttgtcagcccagcggattccgctctccactacgggg
cgcatcagggtgttgtccaatgggactctagaagtacgctatgcccaggttcaggacagc
ggcacataccagtgcacggcgggcaacgcagctggcaacgacagcctgtacgtcagcctc
tatgtgaagggtttcccacgtaaccgcaccatgccatttttcacagacgaaggctggata
gagtcctcacacgctcctactgccaactcctctgcccaggtggccaaccagtacccgttt
gatgccaagacactgatcatcgccaccaccatgggcttcctgtccttcctcagctcagtg
gctatctgcttcgtcttcatgttcttctggagccagagcaaggggcaaatcaaacacaca
gccaccatcgactatgtgccccgttcctcaatgggggtaggaggaggaggagggggaggg
ggtggaggggatgctggcaagttcaccatgaagcttatctaa
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