Oncorhynchus nerka (sockeye salmon): 115104070
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Entry
115104070 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3-like
KO
K14323
protein CASC3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115104070
03015 mRNA surveillance pathway
115104070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115104070
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115104070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
115104070
NCBI-ProteinID:
XP_029481106
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Position
LG21:17973364..17988134
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AA seq
778 aa
AA seq
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MADRRRRRRRASQDSEEDDESGSGSESGKSLSPTAKPRVRDPEPVEAPAVRVVPEKDAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEEEEEEEVPPPAAGPKPTPASDTPAAEGE
LQEGGGKDEEGEKSMRKEVKCEDKGNLAGERQSGDGQESTEDSENKGAKPGQKLDDDQDR
NNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKSREELV
AIYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWQDGDWERPVHTSWQQGGNPNSRSAP
PAVALQQSGPPPSAAPNTQRSNNPPRPSSHPPPRGFQGNRPPQAHHGNDRNQESQRPGPK
AHPAEPLQTRSLPPMEGEQGPRGRGNRGAHTERSPSXLVEEVRSEEDDERNTTTVTTSQS
VYYNRHYSGKGDRERDSAPPPRRQEQQRGGSAPLADNQVTHDASPAPERPVEKKSYSLAR
RTRTRATELGKQASLEEPASTVSSSALKSEPWHGPGQSKGDAGDSSQGTVLTGLDQDLTR
LSLAGPNWPQNPSSYLRAEMRGIPNSIHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSP
EPAPPMHIGVMEGHYYEPMSYQGPIYSHGDSPAPLPPQGILVQPEMHLPHPGLHPHQSSG
PMPNPALYAAPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNTNYPYPAGATLPPMYNPPA
QSQVYGQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEDRSGKVSQEVRS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacgtcgaaggaggcgcgcatcccaggacagcgaggaggacgatgaa
tctggttcgggatcagaaagtggaaagtccctttctccaacggcaaagccccgagtacgg
gaccctgaaccagtagaggcaccagctgttcgtgtggtgccggaaaaagatgctgaatcc
gagtgtgaaagtgaagatggtgtaggagaagctgtcctttctgactatgaaagcgcagat
cctgaggagaatggctcccattcagagggaggtgaggaggaggaggaagaagaggtccct
ccaccggctgctgggcccaaacccactcctgcttccgacacccctgctgcagagggggag
ctgcaggaaggagggggaaaggatgaggagggtgagaaaagtatgaggaaagaagtgaag
tgtgaagacaaaggcaacctggcaggggagcgtcaaagcggggatggacaggaaagcaca
gaagactctgagaataaaggcgctaaaccaggccagaagctggatgatgaccaggatcgt
aataacccagcctatatcccccgtaagggaatgttctttgagcacgacgtcagaggaaat
gcacaggaggaggaacggcctaagggtcgtaacaggaagctgtggaaggatgagggtcgc
tgggaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgaggagctggtt
gcgatctatggctatgacatccgcaacggaggtgtctccaatgagcggtcctatagacag
cgcaagcccagacacagcacctctccagtccgggacaagcgctggcaggacggagactgg
gagaggcctgtccatacctcctggcagcaaggagggaaccccaacagccgtagcgccccc
ccagccgtggccctgcagcagtctggtcctcccccctcagcagccccaaacacccagcgc
agcaacaacccccccaggccctcctcccaccccccaccccggggcttccagggcaaccgc
cctccccaggcccaccacgggaatgaccgaaaccaggagtcccaacggccaggccccaag
gcccaccccgccgagcccctccagacccggagtttaccgcccatggaaggggaacaaggc
cccaggggccgggggaacagaggggcccatacagagcgcagcccttcgngtctggtggaa
gaggtccgcagcgaggaggatgacgagcgcaacacaactacagtgacaacgtcacagtcc
gtgtactacaatcgccactacagtggcaagggagatcgcgaaagggactctgcgccaccg
ccacgacgacaggagcagcagcgagggggatctgctcctctggcagacaaccaggttacc
cacgatgcctccccggctccagagcgccccgtggagaagaagtcgtattccctagccagg
agaactcgcacccgggccactgagctgggcaagcaggcctctcttgaggagcctgcctcc
accgtctcttcctcggccctgaagagtgagccgtggcatggccccggtcagagtaagggg
gatgctggagacagcagccaagggacagtactcacagggttggaccaggacctgaccaga
ctcagcctggctggaccgaactggccccagaacccatcttcgtatctacgcgctgagatg
aggggcatccctaactctatacacatgggtggagcacctccacaatacagtaacatagaa
gagctgggagctggtaaccgggcaaagcggtactcgtcccagcgccagaggccaagcccg
gagcccgctcctcctatgcacataggggtcatggagggccactactacgagcccatgtct
taccaaggaccaatctattcccacggtgacagccccgcccccctcccaccccagggcatt
ctggtccagcctgagatgcacctcccccacccaggtctacacccccaccagtcgagcggc
cccatgcccaacccggctctctacgctgctccccctgtctccatgtcccctggacagccc
cctccacagcagctgttggccccgccattctaccctccgccaggtgtcatgacctttggg
aacaccaactacccctacccggcaggcgccaccctgccccccatgtacaaccccccggcc
cagtcgcaggtgtacggccagtcgcaggtgtacggtggggtgacttactacgacccgatg
cagcagcaagcccagcccaaaccctcgcctccccggcgttcctcccagcccgtcaccgtc
aaacctcccccaccagaggaccggagtgggaaggtcagtcaggaggtcagatcctag
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