Oncorhynchus nerka (sockeye salmon): 115104123
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Entry
115104123 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115104123
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
one04054
]
115104123
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115104123
Pattern recognition receptors [BR:
one04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115104123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
Lambda_Bor
Motif
Other DBs
NCBI-GeneID:
115104123
NCBI-ProteinID:
XP_029481211
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All DBs
Position
LG21:complement(19881648..19886830)
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AA seq
701 aa
AA seq
DB search
MDHGHCLLLIQNIELLQKHLTSRMADFGLYEYQEEVVQRALRGENIIIWLPTGGGKTRAA
VYVAKKHLENNPGAKVAVLVNKVHLVEQHYNKEFKPYLGRDYSLVSISGDCDQKDFFGCE
VKNSDLVICTAQILENALTNQEEGKHVELSQFTLLIIDECHHTHKEGVYNKIMGRYVAQK
LKGERRLPQILGLTASPGTGGAKSIKGAVDHVLQICANLDSVIVSSKVYAPELKKKVPRP
RKRFDIVDRRPQDPFGDHLKFMMQFIHDFMALGPDFPVKEFGTQEYEADVVILEKKGVTD
RNRLLAQCALHLRQYNNTLLINDTVRMVDAFRVLESYYSTKTSTATDGTDFFLLGLYQEN
EVELRKLAGDARFENPKMGKLQNTLLEQFDQGEHSRGILFSKTRKSTHCLYDWVSNNPAL
QRAGIRAAILTGAGNGTNYMTQNEQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVVR
YGLLTNEIAQQQASGRARASDSVYSVVAQAGAGEVRRERLNECLEDLTGRAIGEVQRMEP
REFQMKITDLQTEAILTRQLAEQLKIKKRSRFSAATVQLSCRDCFVPVAFGNDIKVIENA
HHVNINPDFEKYYKTGEQTPLKTFEDWEPGRVISCAACGKQWGREMVYKEIALLPILAIE
NFAMETPEGRKLANKWKKVEFTVEEFNFSMYCQNKFPNLLD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaccatggacattgtctgctgctgatccaaaacatagagctgcttcagaaacacttg
accagtaggatggcagactttgggctgtatgagtaccaggaggaagtggttcaacgggct
ctacggggggagaacattatcatctggctgcccaccggaggaggaaagacacgggctgct
gtgtatgtggccaaaaaacatctggagaataaccctggagctaaggtggctgtgctggtc
aacaaggttcatttggttgaacaacactacaacaaagagttcaaaccctacctgggtcgg
gactatagcctggtgtctatcagtggggactgtgaccagaaagacttctttggctgcgag
gtcaagaactctgacctggtcatctgtacagcacagatactggagaatgccctgaccaac
caggaggagggaaaacatgtcgagctctcacagttcactctgctgatcattgatgagtgc
caccacactcataaggagggtgtctacaataagatcatggggcgctacgtggcacagaag
ctgaagggggagagacggctgccgcagatcctgggcctcactgcctctcctgggacaggg
ggagccaagagcatcaaaggagctgtggaccatgtgctgcagatttgtgccaacctggac
tcagtgattgtgtcgtccaaagtgtacgcccctgagctgaagaaaaaggtccccagaccc
aggaaaaggtttgacatcgttgacagaagacctcaggacccatttggggatcacctgaag
ttcatgatgcagtttatccatgacttcatggccttagggcctgactttcctgtcaaggag
tttggcacgcaggagtacgaggcagacgtggtgattctggagaagaagggtgtgacagac
aggaacagactgctggcccagtgtgctctccacctgcgtcagtacaacaacaccctgctc
atcaacgacactgtgcgcatggtggatgcctttagggtcctggagtcctactatagtacc
aagacctccaccgccacggatggaaccgacttcttcctgcttgggctctaccaggagaac
gaggtggagctgaggaaactggcaggcgatgcccggtttgaaaaccctaagatggggaag
cttcagaacaccctgctggagcagtttgaccagggtgaacactccagaggcatcctgttc
tccaagacccgtaaaagcacccactgcttgtatgactgggtgtccaacaacccagcactg
cagcgtgctggtatcagggcagccattctgactggcgctggcaatggcaccaattacatg
acccagaatgagcagaaggacacaatccgcaacttccgcctgggctccctcaacctcctg
atctccaccagcgtagccgaggagggcctggacatcccagaatgcaacctggtggtgcgc
tacgggctgctgaccaatgagatcgcacaacagcaggccagtggccgggctcgggcgagt
gacagcgtttactctgtggtggcccaggcgggggcgggggaggtgcgtcgggaacgcctc
aatgaatgtctggaggacttgactggcagggccatcggcgaagtgcagaggatggagccc
agggagttccaaatgaagatcactgatctccagacagaagccatattgaccagacagttg
gcagaacagttgaagatcaagaagaggagtcgtttcagtgctgctacggttcagctctcg
tgtcgagactgttttgtgcccgtggccttcggcaatgacattaaagtaattgaaaacgca
caccatgtcaacatcaacccggactttgagaagtactataagaccggtgagcagaccccc
ctaaagacttttgaggactgggagccaggccgtgtgatcagctgtgctgcctgtggcaag
caatggggaagagaaatggtatataaggagattgccctgctgcccattctggccatcgag
aactttgccatggagactccggagggaagaaaattagccaacaagtggaagaaagttgag
tttacagtggaggagtttaacttcagcatgtactgtcaaaacaaattccctaacttgttg
gattga
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