Oncorhynchus nerka (sockeye salmon): 115104399
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Entry
115104399 CDS
T07952
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115104399
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Gene cluster
GFIT
Motif
Pfam:
Collagen
PET
Motif
Other DBs
NCBI-GeneID:
115104399
NCBI-ProteinID:
XP_029481685
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Position
LG21:1459223..1480562
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AA seq
1115 aa
AA seq
DB search
MSAGSLGSATVSTVTRSNYSSSAGAGSGGVKRGGAQGSASSAVSFSPTPTERKSMTTTMT
ARSMGYEGRSIGNSSPEYTRREYAASTPTRGRSHSRESEIRCRLQSASPTAKRWTELEDV
KRLLKGSRSSSISPPRSPTSTLPIPRKACVETRTMPNRSQSGQYDSATLDLGMPSYMWSG
PTAGGYGYHSNTINLSPTSTLQHSPISHSQKNVTSTGVSTTTVAPSSPTSEEAKEYKFML
LEKENAPVKKETERLAMAKETGKQFSSAATAIAYSEDSLKKEKKKLSSFVETATARTTET
NAGSLTKVSTKDKATYPEMCKDESGGGLGFWSCCSWWKWLLGLLLGLLLLLGLLLGLIAL
AEEVRRLKARVDALEQASSSSSTSSTSSTTLLRSDNGINLGVAAGAGPGSANGQGQDSVA
LQRTVQQIVRTELQSDTVRATLAHSMKGARGEPGTKGDQGAPGVKGDNGFPGLPGPPGQM
GHSGQEGPRGPKGNAGEAGAEDPPGQRGREGPTGSRGEPGPPGFGEKGDKGSPGEPGGPG
PAGTAGPVGPKGSVGGQGATGIPGSPGPQGFRGEGGAPGPKGEKGPAGPPGNKGESGEKG
PRGTSGDPGQKGLPGPDGTKGSKGPAGAPGADGEKGSRGDKGSDGLPGPRGPTGPPGDAG
LPGIPGLQGPPGIPGNPGQPGGKGEAGEPGRIINAGNSVAIPGPPGIPGPPGIPGPAGVA
GSPGLSGPVGPAGLPGTPGPRGEKGEEGEKGEKGKPGITDVHLWLVFLAHLALQGPQENQ
VRVPQVLKVLKESQVYQVLVCPAPEEIRESQVASCPTQEPSSLGHQDLLAQLAFRDHQVT
QVSPVYQEFPEIPVSVGFPGPQGQPGGPGPEGDSGLPGPQGPEGPEGQPGPKGEAGVPGA
PGIPGYSSGGSSRSSPGAPGPPGPPGRDGPPGSGTPDVRQYITEYLKSDGVREYMSGPPG
PPGVPGPPGDGSVESVDDLASRVIAYIQREEVRPYVIGPPGPAGPPGIPGIPWRGGYGFN
THEVAGRVLNLMNGKESLWIASRVWWACSDPLDLPAHQAYLGPTVTSLIFCKMLNTVASW
ALRGLLVHLVSQALLALKALPVLQDRPPTAALDTG
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccggcagcttgggctctgcgaccgtttccacggttaccaggtccaactacagc
tcctcggcaggggcgggttcaggaggcgtgaagaggggcggggcacaggggtctgcatcc
tctgctgtcagcttctcccccacccccacggagagaaagagcatgaccaccaccatgacc
gcccgctccatgggctacgaaggaagatccattggaaactcatctccggaatacacaagg
agagaatatgctgccagtacacccaccagagggcggagccacagtagagagagtgagatc
agatgcagactgcagagtgcctctcccacagccaaaagatggacggagctggaagacgtg
aagcggctgctgaaggggagtcgctccagcagcatcagcccccctcgctcccccaccagc
accctccctattcccaggaaggcctgcgtagagaccagaaccatgccaaacagatcccag
tcaggccagtacgacagcgccaccctggacttaggaatgccttcctacatgtggtcaggc
cccacagctggaggctatggttaccacagcaacaccatcaacctgtcccccacctccacc
ctccaacactcacctatatcacactcacagaaaaatgtcacaagcacaggggtgtccaca
accacagtggcgcccagcagtcccaccagtgaagaggccaaagaatacaaattcatgctg
ctggagaaagagaacgctcccgtcaaaaaggagacggagagactcgccatggccaaagag
accggcaaacagttctcctctgctgccactgctattgcctattctgaggactcactgaag
aaggagaagaagaagttgtccagctttgtggagacagctacagccagaaccacagaaact
aacgctggatccttgacgaaagtgtcaacgaaagacaaagcaacctatccagagatgtgt
aaggacgagtctggaggaggtctgggcttctggtcctgctgctcctggtggaagtggctg
ctgggcctcctgctgggtcttctgctcctcctggggctcctcctgggactcatcgccctg
gccgaagaagtcagacgtcttaaagctcgtgtggatgccttggaacaagcctccagctct
tcctcaacctcctctacctcctctaccacactgctccgctctgataatggtatcaatctg
ggagtggcagcaggagcaggtccaggatcagctaatggacaaggccaagactctgtagct
ctgcaaaggacagtacagcagattgtcaggactgagctgcagtctgatactgtacgagca
acacttgcacactcaatgaaaggagcgagaggagagcctgggaccaaaggtgaccaaggt
gctccaggagtcaaaggtgataatggattccctggcctaccaggtcctccaggtcagatg
ggtcacagtggacaggagggcccgaggggacctaaaggaaatgcaggtgaagctggtgcg
gaggaccccccaggccagaggggccgagaaggaccaacgggatcacgtggagagcctggt
cctccagggtttggagagaaaggggacaaaggttctcctggtgaacccggaggccccgga
cctgctggcactgctgggcctgttgggcctaaagggtcagtgggtggtcagggtgctaca
ggtatcccaggatctcctggcccacagggtttcagaggtgaaggaggcgctccaggaccg
aaaggagagaagggaccagctggacctccaggaaataagggcgagtcaggagagaaagga
ccccgtggaacatcaggtgacccaggtcaaaaaggacttccaggaccagacggaacaaag
ggatccaaaggacccgcaggtgctcccggggctgacggtgaaaaaggctctagaggtgac
aagggatcggatggattaccaggtccaagaggaccaacaggacctccaggagatgcaggc
ctcccaggcattcccgggcttcaaggtccaccaggtataccaggtaatccaggtcagcct
ggaggtaaaggtgaagctggagaacctggtagaatcatcaatgcaggtaattcggttgcc
atccccggacctccaggcatccccggacctccaggcatccccggacccgctggtgttgcc
ggatcccctggactctcaggtcctgttggccctgctggtcttcctgggacgcctggtccc
aggggagaaaagggagaggaaggagagaagggagagaagggaaagcctggtattactgac
gtgcacctgtggctagtcttcctggcccacctggccctccagggcccccaggagaaccag
gtaagggtcccccaggtcctgaaggtcctcaaggagagccaggtgtaccaggtgttggtg
tgcccggcccccgaggagataagggagagccaggtagcttcgtgcccaactcaggaacct
tcttcgctgggccaccaggacctgctggcccaactggccttccgggatcaccaggtgacc
caggtcagcccggtttaccaggagttcccggagatcccggtgtcggtgggtttccctgga
ccccagggacaacctggaggtccaggaccagaaggggacagtggacttccagggccccaa
ggtccagagggccccgaggggcaaccgggtccaaaaggtgaggctggcgttccaggtgct
ccaggaatccctggctactccagtggtggatcgtccaggagttcccctggagcgccaggt
ccacctggacctcccggccgcgatgggccacctgggtctggaacaccggacgtccgccaa
tacatcacagaatacctcaagagcgatggtgtcagggagtacatgtcgggacctccgggt
cctccaggtgtaccggggccccctggtgacggatcagtggagtcagtggacgaccttgct
agtcgcgtcatcgcatacatccagagggaggaagtgcgaccctacgtcatcggtcctcct
ggccctgctggacctcctggcatcccagggatcccatggagaggaggctatggctttaat
acccatgaggtggctggacgagtcctcaatctaatgaatggtaaggaatcactatggatc
gcgagcagggtatggtgggcatgctcggaccccctggacctcccggcccaccaggcctac
ctgggtcctacagtgacatctcttatcttctgcaaaatgctgaatacagtggcgtcttgg
gcgctcaggggcctcctggtccacctggtgtcccaggccctgctggccctcaaggccctg
ccggtccttcaggacaggccccctacagcagctctggatacaggctag
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