Oncorhynchus nerka (sockeye salmon): 115104461
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Entry
115104461 CDS
T07952
Symbol
stxbp5l
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115104461 (stxbp5l)
Membrane trafficking [BR:
one04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
115104461 (stxbp5l)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
115104461 (stxbp5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR19_1st
Lgl_C
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Synaptobrevin
PEP5_VPS11_N
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115104461
NCBI-ProteinID:
XP_029481726
LinkDB
All DBs
Position
LG1:14911212..15147587
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AA seq
1261 aa
AA seq
DB search
MKKFRKVLDGLSSSSPGGVASPSCGSAAGTPTAHAPTPQDIHVQETLVSENFQICKTVRH
GFPYQPTCLAFDPVQKILAIGSRTGGIRILGRPGVDCYSQHESGAAVLQLQFLINEGALV
TACADDTLHLWNLRQRRPAILHSLKFNRERITFCHLPFQSKWLYVGTERGNTHIVNIESF
VLSGYVIMWNKAIELATKAHPGPVVHLSDSPKDEGKLLIGFESGTVVQWDLRAKKVDFRI
YYDEAIHSVSWHHEGKQFMCSHSDGSLTMWNLRNTARPIQITYPHGKILKDGRKESCKPI
LKVEYKTSRNSSEPYVIFSGGLSYDKSGGRRPTLTIMHGKAITVLEMDHPIVEFLVLCDT
PYSNEVQDPYAVVVLLEKDFIVVDLTQSNFPIFENPYPMDIHESPVTCTAYFAECPPDII
PILYSIGAKQKKTGYSHKEWPVSGGTWTLGSQTYPEIIVTGHADGTVKFWDASAITLQML
YKLKTSKVFEKPKAGEGRAGELVEEDPYAVQMVSWCPHSRLFCVVGISAHVILYRFSKHD
ANTQIVSLEVRLQFDSEDVISPSEAENNLCFSDPSSPQPPGSPGSGTQDSLPCLKVKSRP
VRMPPGYQAEMVVQLQWVDGEPPQQITSLDINSAYGLLAFGNCNGLTVVDFLQKTILMCM
GTLDLYGAADPYQRLTRSPRKNRQSTSDFCMRGLSHFYSDSKKRIRTSYQSLTELSDNQV
SMDMERSKSPTSVPYPSSLHYDPRSMPEPVASLRASHCSPVFYLLDNVKGPGRKLSLPTD
LKTDLDHVNGHCTSPTSQPCSVGKPRITGVPEGPRLTRRGPGRPPFRKAQSAACMEISLP
VSSHTEGGHASRRAMLQQLHGVSMYSHDEHHTTSYNWSERESRENSFSRSRSSSVSSIDR
DTKESVTTLQFGESYGRKGDALPTACLWVGTSLGVVLLLPISIPTEEEERMEEPITMGPS
GTVLMLKGSVLRFAFLDCGGALIQSPYEVWRDPNGPEDPDRPRRRKLINFSPSSSQEACG
DGHLAVVCSEKQAKVILMPTQAVLFTHNITESSFLLRADVVSVCNSVCLACFCANGHIMT
LSLPSLRPLMDINYLPLTDLRIARTFVFTNGGQALYLSSPTEIQRLTYSQEMTDNLQDML
GELFTPIETPEAQNKGFLKGFFGGNAQTFDREELFGEAAAGKASRSLAQHIPGPMGLENM
KAAAGGVVGDLARARIALDQRGERLGELEERTALMMNSAETFSTHAHQVMLKHKDKKWYQ
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttcgaaaggtactggacggcctgtcatcctcatccccggggggtgtcgcg
tccccctcgtgcggcagtgcagctggtaccccgaccgctcatgcgcccactccccaggat
atccatgtccaggagacgctagtctcggaaaactttcagatatgcaagacggtacgccat
ggcttcccgtaccagcccacctgcctggcctttgatcccgtccagaagatcctggccatc
ggctccagaacaggaggcattcggatcctgggacggcctggtgtggactgctatagccag
catgaaagtggagccgctgtcctccagctacagttcctcatcaacgagggggcgctggtt
acggcatgtgcagacgacacgctacacctgtggaaccttcgccagagacgcccagccatc
ctgcactcgcttaaattcaacagggagaggatcactttttgccacctccccttccagagt
aaatggctgtacgtgggcacagagcggggcaatacacacatcgtcaacatcgagtccttc
gttctgtctggatacgtcatcatgtggaacaaggccatagaactagcaactaaagcacat
ccagggcccgtggtccatctgagtgacagcccgaaggatgaaggcaagttgctgataggg
tttgagagtggaacagtagtccaatgggacctccgagccaagaaggttgacttcagaatc
tactacgatgaggctatccattctgtgagctggcatcacgaggggaagcagttcatgtgc
agccactcagatggcagcctgactatgtggaacctgagaaacacagccaggcccattcag
atcacctaccctcacgggaagatactgaaggacgggaggaaagaatcgtgtaagcccatc
ctcaaggtggaatacaagacctccaggaacagcagtgagccctatgtcatcttctctggg
ggtctgtcatatgacaagtccggtggaaggaggcccaccctgaccatcatgcacggcaaa
gccatcacagtgctggagatggaccaccctatcgtagagttcctagtactctgtgacacc
ccatactccaacgaggtccaggatccttatgcagtggttgtgcttttagaaaaggacttc
atcgtggtggatctgacacagagcaacttccccatctttgagaacccttaccccatggac
atccacgagtctcctgtcacctgtacggcttacttcgctgagtgccctcctgacatcatc
cccatcctctactccataggggccaagcagaagaagactggctacagccacaaggagtgg
ccagtgagcggtggcacatggacactaggctcacagacctacccagagatcatcgtcaca
ggacacgcagacggaaccgtaaagttttgggacgcctctgctattacactgcagatgctg
tacaagctgaagacgtccaaggtgtttgagaagcccaaggcgggagagggtcgggcgggc
gagctggtagaggaggacccctacgccgttcagatggtcagctggtgcccacatagccgt
ctcttctgtgtggtgggcatttctgcccacgtcatcctctaccggttcagcaaacacgac
gccaacacgcagatagtgtcactagaggtgcgcctgcagtttgattcagaggacgtcatc
tccccgtcagaggcagagaacaacctgtgtttctcggaccccagttccccccagccgccc
ggtagccctggcagtggcacacaggacagcctcccctgcctcaaggtgaagagtcgtcca
gtgcggatgcctccggggtaccaggctgagatggtggtgcagctgcagtgggtggatgga
gagcccccccagcagatcaccagcctggacatcaactctgcctacggcctcctagcgttt
gggaactgtaatggtctaacggtggtggacttccttcagaagacgattctgatgtgtatg
ggcacactggacctgtacggagccgcagacccctaccaacgactcacacgctccccacgc
aagaacagacagtccacctcagacttttgcatgcgtggcctgtctcacttttattcagat
tcaaagaaaaggatccgtacgtcctatcagagccttacagaactctccgataaccaggta
tccatggacatggagagaagcaagtcacccacctcagttccctacccaagctcccttcac
tatgaccctcgctccatgcctgagcctgtggccagtctgagagccagccactgcagtcca
gtcttttacttactggacaatgtaaagggacccggcagaaagttaagtctgccaacagat
cttaagactgatcttgatcatgtcaatggacattgcactagtcccacctcccagccctgc
tccgtggggaagcctcgcatcacaggggttcccgagggcccgcggctcacccggagaggg
cctggccgaccgcccttccgcaaggcccagtccgccgcttgcatggagatctctttgcct
gtttcctcccacacagaaggtggccatgcgtccaggagggcaatgcttcagcagttgcat
ggagtcagtatgtactcccacgacgagcaccacaccacctcctacaactggagcgagaga
gaaagtagagagaactcattcagtcgctcgcggagctccagtgtgtccagcattgatcgc
gacaccaaggagtcagtgaccacgctgcagttcggagagtcctacggccgtaagggcgat
gctctgcctaccgcctgcctgtgggtgggcaccagcctgggcgtggtcctgctcctgccc
atatccatccccacagaagaggaggagaggatggaggagcccatcaccatggggcccagt
ggtaccgtcctgatgctaaaaggctctgtgttgcgatttgccttcctggactgtgggggc
gctctcattcagagtccctacgaggtgtggcgggaccccaacggtccggaggaccccgac
cggccccgcaggcgcaagctgatcaacttctccccgtcatcatcccaggaggcgtgtggt
gacggtcacctggccgttgtgtgctctgagaagcaggccaaggtcatcctcatgcccacc
caggctgtcctgttcacccacaacatcaccgagtcctccttcctcctgcgagctgacgtt
gtctccgtctgcaacagcgtctgcctggcctgcttctgcgccaacggacacatcatgacc
ctaagtttgcccagtctaagacccctgatggatatcaactaccttcccttgaccgacttg
cgtatcgcccggacctttgtcttcactaacggaggccaggccctgtatctgagctctcct
acagagatacagcgtctcacatacagccaggagatgacggacaacctacaggacatgctg
ggggagctgttcactcctatagaaacaccagaggcccagaacaaaggattcctcaagggc
ttctttgggggcaacgcccagaccttcgacagagaggagctgtttggggaggcagcagcg
ggaaaggcctctcggagtttggcccagcacatccctggtccaatgggattggagaacatg
aaggctgcagccggcggcgtcgtgggggacctggcccgagcccgcatcgccctggaccag
agaggagagagactgggtgagctggaggaacgcaccgccctcatgatgaacagcgccgag
accttctccacacacgcccaccaggtgatgctgaaacataaggacaagaaatggtatcag
ctttaa
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