Oncorhynchus nerka (sockeye salmon): 115104622
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Entry
115104622 CDS
T07952
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
115104622
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115104622
Transporters [BR:
one02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
115104622
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Gene cluster
GFIT
Motif
Pfam:
SNF
DUF373
Motif
Other DBs
NCBI-GeneID:
115104622
NCBI-ProteinID:
XP_029481840
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Position
LG22:32869502..32887422
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AA seq
452 aa
AA seq
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MDDSKQNRSTNLTSRQNTTLPVMEFWERRVLNISGGIEEMGNIRWELALCLLLTWVICYF
CVWKGIKSTGKAAYFTATFPYAMLLVLLIRGVTLPGAIDGIIFYIYPDISRLTDPQVWMD
AGTQIFFSYAISLGFLTSLGSYNSYNNDCYKDCFYLCLLNSGTSIVSGFAIFSVLGFMTY
EQGVSIEEVAESGPGLAFIVYPRAVAMMPMSQIWSACFFIMIILLGLDSQFVGLECLMTS
VVDLFPTYLRREFRRELLLLAICTIGFILGLALVTEGGMYLLQLLDHHVCSGTTLLLLAI
CQSVCIAWVYGAERFYGNISDMIGYRPLPLMKYCWLYITPTVCTATFIFSIVKYSPLKFS
NTYVYPVWANIIGWFIATISLSFIPLWMVYKMANSNGTLRQRFSVLCRPVDDLPVNHTCR
TDGPLHLATSDVMSSSMELKPLSFTVGDKDAL
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcaagcagaatcgcagcaccaacctgacatcaagacagaataccacacta
ccagtcatggagttttgggagcgcagggtgctgaacatttccggggggatcgaggagatg
ggcaacatcagatgggagctggcgctgtgtctccttctcacctgggtcatctgttacttc
tgtgtctggaagggaattaagtccacaggcaaggctgcttactttacggccacattccca
tatgccatgctcctggtcctgctgatccgcggtgtcactctacctggagccatagacggc
atcatcttttacatttaccctgacatctctcgcctcacagacccacaggtgtggatggat
gcaggcacacagattttcttctcctatgctatcagcttgggctttctcacatccctgggc
agctacaacagttacaacaacgactgctacaaggactgtttttacctgtgtcttctaaac
agtggcaccagcatcgtgtcaggcttcgcaatcttctctgttttgggcttcatgacctat
gaacagggggtgtccattgaagaggtggctgagtcaggtcctgggctggcatttattgtg
taccctcgagcagtagccatgatgcccatgtctcagatctggtctgcctgtttcttcatc
atgatcatccttctgggtctggatagccagtttgttgggctggagtgtttgatgacatct
gttgtggatctgttccctacctatctgcgccgtgagttcaggagagagctgctgttgctg
gctatctgcacaataggcttcatactggggcttgccctggtcacagagggagggatgtac
ctgcttcagctgctagaccaccatgtgtgcagtgggaccaccctgctactgctggccatt
tgtcagtctgtctgcatcgcctgggtctatggtgctgaacgtttctatggtaacatcagt
gatatgattggctacagacctctgcctttgatgaagtactgctggctctacatcactcct
acagtgtgcacagctaccttcatcttctccatagtcaagtactcaccattgaagttcagc
aacacatatgtttatcctgtctgggctaacatcattggctggttcattgccactatctcc
ctctccttcatcccgctatggatggtctacaaaatggccaacagcaatggaaccctgcgc
cagcgattctctgtgctctgtcggcctgtagacgacctccccgtgaaccacacatgcaga
acagatggccctcttcatctggcgacctctgacgtcatgagctccagcatggagctgaag
cctctgtccttcacagtgggagataaggacgcactgtga
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