Oncorhynchus nerka (sockeye salmon): 115104675
Help
Entry
115104675 CDS
T07952
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115104675
Peptidases and inhibitors [BR:
one01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
115104675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
Motif
Other DBs
NCBI-GeneID:
115104675
NCBI-ProteinID:
XP_029481892
LinkDB
All DBs
Position
LG3:complement(11741995..11760318)
Genome browser
AA seq
1188 aa
AA seq
DB search
MLRKNNMGKGVALFLLLLALLHEAIGQRRRKGKYSVLRDGGNDMTTCSMEVAFILDSSES
AKTFLFEKQKSFVLHFSTRLTMLQVSGWTLKLRMAALQYSSSVSIEHSFTAWQDLDVFHS
RVSSMAYIGHGTYSTYAITNATQLFTQETKEDSVRVEVLMTDGADHPRNPDVIGAAADAK
ASGVKLFAVGLSDLARQSQNSAKLRAIASTPAQQFVHSLTDPQLEEKLLKELVSVLSRPC
PQVKVCLCERGERGPPGNPGKKGDPGYEGPSGPKGSRGEPGVSGRPGSDGLEGSPGYKGD
KGEIGDCGTHGEKGDEGPGGPPGPRGPRGDQGVNGPPGDQGPEGQTGPKGDQGPTGASGP
AGDIGIGFPGPKGAKGIQGRPGTLGPIGIGEPGQPGPPGLAGAQGNQGAVGEGLPGPKGD
RGYEGPRGERGLTGVGVKGDKGNPGQLGSQGPVGMPGAGIQGEKGSQGPVGPPGPRGNPG
VGLMGQKGSQGFSGEPGIPGERGVGEPGPKGDPGSEGLPGIPGLSGEDGDIGQKGDIGLQ
GPRGPDGAPGKGVPGEKGDRGERGSRGQLGAVGPVGPMGAKGEPGSAGRAGTNGPPGRGL
PGIKGDPGAVGPPGHVGEPGIGITGPKGERGLPGPIGPPGLEGEGLPGTPGPPGIPGLTG
ETGPEGKGLPGPKGDRGTPGPTGPAGAPGVGLMGPKGSAGQIGAPGPQGLPGEGIQGPKG
ESGFQGITGPRGPPGQGIQGDKGDRGFVGERGRKGDRGETGERGAAGPLGRLGEKGELGL
TREEVIKLVRSICGCGVKCRESPLEMVFVIDSSESVGPDNFNVVKDFVNALVDRASVSRE
TTHVGVVLYSHINMVVVSLHQQASRDQVKAAVRTMTYLGEGTFTGSAIHQANQVFQAARP
GVRKVAIVITDGQADERDTVRLEEAVKEANGSNIETFVIGVVNQSDPLYEEFKKELHLMA
SDPDREHVYLIDDFRTLPALESKLLSRICESDGGAQFSSIPSSRYSPGTPGQAGIVRETP
ERTDTDTPTFNGDFKKTQMVPGPPGESDRVFTPTGPETGDRDNSETYRVPSFDREPFKRL
PEFLLPSEVKNPTHGVVMTGPQAPTQMPLPVVKLPRFLPTSPPLPQDALIPDESCGQILD
PGPCRNYVVKWYYDTTANACAQFWFGGCQGNQNQFESEKSCKKTCVKV
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaaagaacaacatggggaaaggagtggctctgttccttctactgttggcactt
cttcacgaggctataggtcagagaagaagaaaaggaaaatacagtgtcctcagagatgga
ggaaatgacatgacaacatgttccatggaggtggccttcattctggacagttcggagagt
gccaagaccttcctgttcgagaagcagaagtcctttgttctgcatttcagcactcgtctc
accatgctccaggtgtctggatggaccctgaagctgcggatggctgctctgcagtacagc
agctccgtgtctatagagcacagcttcactgcctggcaggacctggatgtgttccacagc
agagtcagctccatggcctacataggccatggcacctactccacctatgccatcaccaac
gccacgcagctctttacccaggagaccaaggaggacagtgtcagggtggaggtgctcatg
accgacggtgccgatcatccgaggaaccctgatgtgatcggagcagcggcagatgctaag
gctagtggcgtgaagctctttgctgtagggttgtcggacctggcccgccagagccagaac
agtgccaaactccgggctatcgccagcacaccggcccagcagttcgtccacagtctcact
gacccccagctagaggagaagttactgaaagagttggtgagtgttctgtcaagaccttgt
ccacaggttaaagtgtgtttgtgtgaaagaggggagagaggccctcctggaaacccaggt
aaaaaaggagatccaggatatgaaggaccatctggtccaaaaggatcaaggggagaacct
ggagtcagtggccgaccaggaagtgacggtcttgagggcagtcctggttataaaggtgac
aagggggagataggagactgtggcacccatggggaaaaaggagatgaaggccctggagga
cctcctggcccacggggacccagaggagaccagggtgttaacggaccacccggggaccag
ggtccggagggccaaacaggacctaaaggggaccaaggacccaccggtgcatctggacca
gcaggtgacattggcattgggttcccaggtccaaagggggccaaaggaattcagggaaga
ccaggaacccttggtcccattggaattggagagccaggacagccaggacccccaggactt
gctggagcacagggtaaccagggagctgttggggaggggctccctggcccaaagggggat
cggggctacgagggccccagaggtgagcgtggtctcactggtgttggggtcaaaggtgat
aagggaaatcctggacagcttggatcacaaggaccggtgggaatgccaggggcaggaatt
caaggagaaaaggggagccaagggccagttggccctccaggccccagagggaatccaggt
gtgggacttatgggccaaaagggaagccaaggcttctcaggtgagcctggaatcccaggg
gagagaggagtcggggagccaggacctaaaggagacccaggatcggaggggttgcctggt
attccgggcctctctggagaggatggagacataggacagaagggtgacattgggttacaa
gggcccaggggacctgatggggcacccggaaaaggtgtccctggagaaaagggggaccga
ggggagcggggctccaggggccagctaggggcagtagggcctgtggggccaatgggggcc
aagggtgaacccggaagtgctggacgagcaggtacaaatggaccacctgggcggggatta
cccggtatcaagggggaccctggtgcggtaggcccacccggacatgttggtgaaccagga
ataggaatcactggaccgaagggtgagagagggctaccggggcccattggtccacctggg
cttgaaggggaaggcctccctggaactccaggcccccctggaataccaggactgacaggt
gagactggaccagaaggaaaaggtttacctggtcctaagggagaccggggaactccaggc
cccacaggaccagctggagcacctggagtcgggctaatgggtcccaaggggtcagcaggt
cagattggagcaccgggtccccagggactgcctggagagggcattcaaggaccaaagggg
gagtcaggattccaggggatcacgggccccaggggacccccaggacagggtattcaaggg
gataagggagacagggggttcgtgggtgaacgaggcagaaagggggacaggggagagact
ggagagagaggagctgctggacctttgggcagactgggagaaaaaggggaacttggccta
acaagagaggaggtcatcaaactggtcagatctatatgtggatgtggggtgaagtgccgt
gagagcccactggagatggtctttgtgattgacagctcagagagcgttggccccgacaac
ttcaacgtggtcaaggactttgtgaacgctctggtcgaccgcgcctccgtgagccgggag
accactcacgtcggggtggtcctctacagccacatcaacatggtggtggtcagtctgcac
cagcaggccagccgggaccaggtgaaggcggcggtccgcactatgacctacctgggcgaa
ggcacctttacgggcagcgccatccatcaggccaaccaggtgttccaggcagccaggcct
ggggtgaggaaagtggccatagtgatcacagatggacaggcggacgagagggacactgtg
aggctggaggaggcggtgaaagaggccaatggtagtaacattgagacatttgtcatcggg
gtggtgaaccagagtgatccgctgtacgaggagtttaagaaagagctccacctcatggcc
tctgacccagacagggaacacgtgtacctgattgatgacttcaggacacttcctgccctt
gagagcaagctgctgagtcggatctgtgagagtgatggtggggcccagttcagctccatc
cccagctccagatactcccccggaacccctggacaagctgggattgtcagggaaacccca
gagaggactgataccgacacacccactttcaatggagacttcaagaaaacacagatggtg
ccaggtccaccaggagagtcagacagagtctttaccccaacgggccccgagaccggggac
cgagataactcggagacctacagggtcccatcctttgacagggaacccttcaagcgccta
ccagagttccttcttccgtcagaggtgaagaaccccacccacggtgtggtcatgactggc
ccccaggcccccacccagatgccccttcccgtagtaaagctacccaggttcctcccaacc
tctccacctctgccccaggatgctttaataccagatgagagctgtggacagattctggac
cccgggccttgcaggaattatgttgtgaagtggtactatgacactacggctaacgcctgt
gcccagttctggtttggaggttgtcagggaaaccagaaccagtttgagtcggagaagagc
tgcaaaaaaacctgtgtgaaggtctaa
DBGET
integrated database retrieval system
