Oncorhynchus nerka (sockeye salmon): 115104789
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Entry
115104789 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
115104789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115104789
03036 Chromosome and associated proteins [BR:
one03036
]
115104789
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
115104789
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115104789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
C5HCH
Vps8_C_schizo
Motif
Other DBs
NCBI-GeneID:
115104789
NCBI-ProteinID:
XP_029481990
LinkDB
All DBs
Position
LG22:complement(60091591..60123555)
Genome browser
AA seq
1836 aa
AA seq
DB search
MSSEMLSVPAGTSKLDVLVTKLHEFLAHAPEDDEDRLVTESPDGMTNKDCVEPHSTDRTP
LETSTDTLKQSGCGSRRKPSVVIKHSGLDESGASNESDDDDDGLIINSNGYPDVTRLPKG
TVLVRPEPVENVRDDFRGPEFRCGKSGNLKRAFSRRRGGGEHLEIVSCTACGQQVNHFQR
DSFYQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFCKKC
ILRNLGRKELSGILDEESKWYCYVCSPEPLLDLVVACDNVLDNLGHLWPDHRKRGRGEGK
SGHYDSHPRHSQNIPVGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNTTFV
KFIQGGMQQKQTTELKLQYLKTFQSVLKGLKKSQTALEEALLEEFREMGLPNGGENPTFD
DTDVPQQEQEDCVEIDISDKNGLHYLKKIAAEHLEENDSDSNGFMDDGRPSSSIEMKGVL
GTEIIPRRGRGRPRKNSKPGEDACNVTKQLVVQISPAPVEQEPLSGPPELEVEVELEAEE
EEEERKEKVEEREGDCESIELVTEGEYESAEGSESLELEEEPDNRRSPRVKTTPLRRPGE
GKTQPTPSGADSESDSDPDTSPNAEVPQGADEGGLGRGTDDSDSDEVPAVLQRAAMTRSS
DEAESDDGDHRSVTKKCLFGLKKNTPLSPERVVRKRKVPDHSSDSDSSSDDPDLQKEIKT
MTRPRGRPRKVKREDEPTPSKDSPQHRPRGRPRKVKKEDESTSSKEGNTQAAKPQSTPQS
EHRMKQTPSSSSQEEGDLDSESSDVSGDQKIKPITEEVALLGAAAFDQSSGDEEQPQSGP
SWAAEDDDDPENRIAKKMLLAQIKANYSSGEDFSSNVESSHDDESDREEKEQEDGKDESS
DENGETSSLTSESSKTRHRHRLLRHKLSVDNGNPSEKLDSQSSDDDSQSQQEESGMSEEL
SQSENEGNEQMVKSSTSSTSRVERESVRNYLQKKQQPSYIVLSDSSVDKSDDEEKDGEEG
DNKGTPKGRKKIRRIIVDEHLRSETXRALKEEEERRRHLAKREQREDFREVIIFEDEASR
VACPITTKLVLDQDEGTKEPLIQVHRNLVTRLKPHQVDGVQFIWDCCCESVKKANSTPGS
GCLLAHCMGLGKTLQVVTFLHTMLQSKCMNFRTALVVCPLNIILNWVNEFEKWQVDMGAD
KVKVTELATLKRTQERYIALQRWQMDGGVMIMGXTLGLKVIYGKFKKTFDSTLVDPGTSS
TNYMHVKCXEVNISKAMSAIKTKRRVVLTGTPLQNNLNEYHCMVNFIKENLLGSIKEFRN
RFINPIEKGQCADSNPRDVRIMKNRAHVLHAMLTGCVQRGDYSALTKFLPPKHEYVIAVR
VTPLQYRLYCYYLDNFTGARSVVEGARGKAGTSLFKDFQILSRIWNHPWCLQLNYISKEN
KGHFDGKHQGKTDRKEKENKGKVVNADEDSKDVEVILVWNSTSKGVNVEGDQRAGPLVPV
VNALRSSTSSRPDSPAADWYKSMLSDSDATILGHSGKMCELIRWSVFKITLTPLISFHPT
LSFRGRLFLISTRAGSLGINLVAANRVIIFDASWSPSYDIQSIFRVYRFGQLKAVFVYRF
LAQGTMEEKIYDLQVAKQSLSSRVVDQQQIQRHFTLFELTELYMFEPDLLDDPNSEKKSK
RTTPLLPKDMVLAELLQSCKGQIVCYHEHESLLDHKEEEELSEADRKTAWAEYEAEGAFF
LNKAEHSNTNVPSPSTSTTMAVSLSSLYKTTNGQLKNMIYSSCEKVNEAIKSLHSLLNLS
LDDYVLRLWQDNPSLDEKLVRALAQTWKTSNDKERE
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagagatgctcagcgttcctgctggcacgagcaagctcgatgtgttggtgacc
aaactgcatgaattcttggctcatgctccagaggatgatgaggacagactggtgacagaa
agtcctgatggtatgacaaacaaggactgtgtggagccacattcaacagaccgaacccct
cttgagacctcaacagacaccttgaagcagtctggatgtggttccaggagaaaaccttca
gttgtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagtgatgatgat
gatgacggcttgatcatcaattcaaacggttatcctgatgtaacaagattacctaaaggc
actgtactggtgaggcctgagccagtggaaaatgtcagagatgacttcagaggtcccgaa
ttccgttgtggaaaatctggcaatctgaagagagctttttctaggagacgtggaggtggt
gaacacttggagattgttagctgtacagcctgtggccagcaagttaaccacttccagagg
gactccttctatcagcatccagtactcaaagtacttatttgcaagtcttgtttcaagtat
tactcaagtgatgatatcagcaaggattgtgatggcatggatgaacagtgcagatggtgt
gcagaggggggaaacctgatctgctgcgacttttgccccaatgccttctgtaagaaatgc
attttgcggaacctggggcgaaaagagttgtctggcatcctggatgaggagagtaagtgg
tactgctacgtatgtagcccagagcctcttctggacctggttgtcgcttgtgacaacgtc
cttgacaacttggggcatttgtggccagaccaccgcaagaggggcaggggcgagggaaaa
tctggacattatgactcccatccaaggcattctcaaaacattcccgtgggtcattggaac
catagtggcatggatggtcacgttgtgttcaactacaacacccttcaaattccagaggag
atggccaaaaaggctaaaaacctggtggactctacaaacactgtaaacacaacttttgtg
aagttcattcaaggtggcatgcagcagaaacagacaaccgagttaaagctacaatacctg
aagactttccagtcagtactgaagggtctgaagaagtctcagacggctctggaggaagcc
cttttggaggagttcagagagatgggtttgccaaatggtggcgaaaaccccacgtttgat
gatactgatgtacctcaacaagaacaagaggattgtgtggaaattgacatttctgataag
aatggccttcattacttaaagaaaattgcagctgaacatttggaagagaatgattcagac
tcaaatggctttatggatgatggaaggccttcgtcctcaattgaaatgaaaggtgtcctt
ggcacagagataattcccagacgaggtagaggcaggccgcggaaaaactcaaagcctgga
gaagatgcttgcaacgtgacaaaacaactggtggtgcaaatttcacctgcccctgttgaa
caagagccactctctggccccccagagttggaggtggaagtggagttggaggcagaggag
gaagaggaagagagaaaagaaaaagtggaggaacgggagggagactgtgaatctattgaa
cttgtaacagagggggagtatgaatctgctgagggaagcgaatctctggaactggaagag
gaaccagataatagacgctcacctcgggtaaagaccacacccttgcgcaggccaggtgag
ggcaagacccagccgaccccctcgggtgcagacagtgagagtgactcggaccctgacacc
agccccaatgctgaagtgcctcaaggagctgacgagggagggcttgggagaggaactgat
gactctgactccgatgaggtcccagctgtcctccagcgggccgccatgacgcgtagttca
gatgaagccgagagtgacgatggagaccatcggagtgtgaccaagaaatgcctcttcggc
ctgaagaagaacacgcccctctctccagaaagagttgtccgcaaacgcaaggtgccagac
cactcctctgactctgattcctccagtgacgatccggacctgcagaaggagatcaagact
atgaccaggcccagggggaggcctcggaaggttaagagagaggatgaacctacccccagc
aaggatagtcctcaacataggcccaggggcagacctcggaaggtcaagaaagaggatgaa
tctacatccagcaaggagggtaatacccaggcagccaagcctcaaagcacacctcaatcc
gagcatagaatgaagcagacgccatcctcttccagtcaagaagagggggacctggactct
gagtctagcgatgtcagtggtgaccagaagatcaagcctatcactgaggaggtggcctta
ctgggggcagcagctttcgaccagtcgtccggcgatgaagagcagccccagtctgggcct
tcttgggcagcagaagatgatgacgatccagaaaatagaatcgctaagaaaatgctcttg
gcccaaatcaaagccaactactcatcgggggaggatttctcttcaaacgtggagtcatca
catgatgatgagtctgacagggaagagaaggagcaagaagatgggaaagatgaaagctcc
gatgagaatggggagacctccagtttgacctctgagtccagtaaaacacgtcacagacat
cgtctgctacgccacaagctcagcgttgacaatggaaatccaagtgagaaattggatagc
cagagtagtgatgatgatagccaatcacagcaggaagagtctggtatgagtgaagagctg
agccaatcggagaacgagggcaatgaacagatggtcaaaagctctacatcatctacctct
agagtcgagagggaatcagtccgtaattatctacagaagaagcagcaaccctcatatatt
gtgctgtctgactccagtgtcgataagagtgacgatgaagagaaggacggcgaggaaggg
gacaacaaaggtacacctaagggccgcaagaagatccgcaggatcatcgtagatgagcac
ctccgctcggagacctagagagccctgaaagaggaggaggagagacgcagacacctggca
aaaagagagcagagggaggacttcagagaggtgattatttttgaggatgaggcttctcgt
gtggcctgtcccatcaccactaagctggtcctggatcaggatgaggggacaaaggagcca
ctcatccaggtgcacaggaacctggtgaccaggctcaagcctcaccaggtggatggtgtg
cagtttatctgggactgttgttgtgagtctgtgaagaaggccaattcaacccctggatca
ggctgcttactggcccactgcatgggcctaggaaagacactgcaggtggtgacatttctc
catacgatgctgcagtcaaagtgcatgaacttcaggactgccctggtggtgtgtccactc
aacatcatcctcaactgggtcaacgagtttgagaagtggcaagttgacatgggagctgac
aaagtcaaggtgacagagttggccacactgaagcgaacacaggagcgttatattgccctg
cagagatggcagatggatggtggtgttatgatcatgggcntcacactaggcctcaaagtc
atctacggaaagttcaaaaagacctttgacagtactctggtcgatccaggtacatcctct
accaattatatgcatgtgaagtgttgagaggtcaacatctctaaagctatgagtgccatt
aagaccaaaaggagggtggtgctgacaggcacaccactgcagaacaacctcaatgagtac
cactgcatggtcaacttcatcaaggaaaaccttctgggctcaatcaaggagttccggaat
cgctttatcaaccccattgaaaaaggccagtgtgcagactccaaccccagagacgtccgc
atcatgaagaatcgcgcccatgtccttcatgcaatgttgacagggtgtgtacagagagga
gactactcagccttgaccaagttcctgccccctaaacatgaatatgttatagcggtgagg
gtgacccctctccagtacagactgtattgctactacctggacaactttactggagctagg
tctgtggttgagggagccaggggcaaagccggaactagccttttcaaggacttccagatc
ctcagccgaatctggaaccatccttggtgtctgcagctcaactatatcagcaaagaaaat
aagggccattttgatgggaagcaccaggggaaaactgacaggaaagagaaggagaacaag
gggaaagtggtgaatgctgatgaagacagcaaggatgtggaggtgatcctggtgtggaac
agcacatcaaagggtgtcaatgtggaaggagaccagcgagcaggtccactggttccagtg
gtaaatgcgttgagatcgtccaccagttccaggcctgacagtccggctgcagactggtac
aagtcaatgctgagtgactctgacgccaccatcctgggacactcagggaagatgtgtgaa
ttgataagatggtctgtttttaagatcacactcactcctttgatttcatttcaccccacc
ttatctttcaggggtcgtctgtttctcatctcgacaagagctgggtcccttgggatcaac
ctggtagcagctaacagggtcataatttttgatgcttcgtggagtccctcctatgacatc
cagagcatcttcagggtgtaccgttttggccagctgaaggctgtgtttgtctaccgcttc
ttggctcagggcactatggaggagaagatctatgacctgcaggtggccaagcagtcactg
tcgtcccgggtggtggaccagcagcagatacagagacacttcacactgtttgaactgacg
gagctctacatgtttgagccagacctgctggatgaccccaactctgagaagaagagcaag
aggaccacacccctgctgcccaaggacatggtgctggcagagctgctgcagagctgtaaa
gggcagattgtctgctaccatgaacacgagtccctgctggaccacaaagaggaggaggag
ctcagtgaggctgaccgcaaaactgcctgggctgagtacgaggcagagggtgctttcttc
ttgaacaaggcagaacacagcaacaccaacgttcccagcccctccacctccacaactatg
gctgtcagtctctcatccctgtacaagacaactaatgggcagctgaagaacatgatttat
tctagctgtgagaaggtcaacgaggccatcaagtccctgcattccttactgaacctctcc
ctggatgactatgtgttgcgcttgtggcaagataacccaagtctagatgagaagctggtg
agagccctggcccagacctggaaaaccagcaatgacaaggagcgggagtga
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integrated database retrieval system
